Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000631-TA|BGIBMGA000631-PA|undefined
(254 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.070
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 28 1.1
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 28 1.5
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 28 1.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 2.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 4.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 6.1
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 6.1
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 6.1
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.070
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 13/137 (9%)
Query: 51 PYRSSLYLHSRESTPGYFRDAISPTNG-----LIIRRRDSCKSGSPARDLEHPSTFPSIL 105
PYRSS + E PG D +S +G + + K GS +D P+ +
Sbjct: 13 PYRSS-FSDDLEFDPGQVIDVVSNLDGDWYTGTYVDSDGNRKIGSFPKDFTEPAEDAVFV 71
Query: 106 RRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMK- 164
R + P+PT HS+ S+G P+++R N E + ++ +
Sbjct: 72 ER------ASEMALHQPTPTSAVHSRNSSLGYAPSITRSIKSISNNTEHLGADTESYLSA 125
Query: 165 RDYVGSTNSLPRKHRDL 181
D++ ST+ K D+
Sbjct: 126 NDFIDSTSEALTKIVDV 142
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 120 DTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGSTNSLPRKHR 179
D S HS+R+ S NYN+RE+ S +G + R+ S P R
Sbjct: 8 DDSSRPPSVHSERNQKPSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGTMYPMASR 67
Query: 180 D 180
D
Sbjct: 68 D 68
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 125 TQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGSTNSLP-RKHRDL-- 181
T+K KR S+ S + + N F ++ +S G ++ DY ST++ P +K +D
Sbjct: 46 TRKSPLKRVSITSESSFYKENTFAHHNTTGSNSVGPKKPFLDYHHSTSNTPTKKKKDSFD 105
Query: 182 AASTNSLIRKS 192
AS SL R+S
Sbjct: 106 HASVTSLHRRS 116
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 44 VHGRCSTPYRSSLYLHSRESTPGYF 68
+HG C +PY SS LH S P F
Sbjct: 375 IHGFCPSPYLSSAALHFSISYPASF 399
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 122 PSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSN 158
P+ Q+ H S+P + N FN+ +R+ SSN
Sbjct: 171 PNAMQRPHDLESQPFSYPKIHASNSFNFVKRDIDSSN 207
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 151 RRESISSNGVREMKRDYVGSTNSLPRKHRDLAASTNSL 188
R S +SNG+ K +T+S+P +H A N+L
Sbjct: 720 RFPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMHNTL 757
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 6.1
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 123 SPTQKYHSKRH-SMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGSTNSLPRKHRDL 181
+PTQ+ S SF + S G+ RR S +S GV R + ST +P + DL
Sbjct: 149 TPTQRLQGLTSISSSSFDDGSYGS-----RRISFNSQGVSGRLRRNMDSTVIIPSEDEDL 203
Query: 182 AASTNS 187
+NS
Sbjct: 204 QLPSNS 209
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
Query: 102 PSILRRDRH------SPSVTPPRRDTPSP 124
PS++R +++ SPSV PPR TP P
Sbjct: 569 PSVVREEKNYSEPNASPSVIPPRVPTPVP 597
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 97 HPSTFPSILRRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSF 138
H P +++ SP R PSP H+K HS+ +F
Sbjct: 186 HTFCGPCLMQALTQSPQCPTCRFGLPSPVVLEHAKSHSITTF 227
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,365
Number of Sequences: 5004
Number of extensions: 55439
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 13
length of query: 254
length of database: 2,362,478
effective HSP length: 71
effective length of query: 183
effective length of database: 2,007,194
effective search space: 367316502
effective search space used: 367316502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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