GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000631-TA|BGIBMGA000631-PA|undefined
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.070
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    28   1.1  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    28   1.5  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    28   1.5  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   2.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   4.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   6.1  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   6.1  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   6.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 13/137 (9%)

Query: 51  PYRSSLYLHSRESTPGYFRDAISPTNG-----LIIRRRDSCKSGSPARDLEHPSTFPSIL 105
           PYRSS +    E  PG   D +S  +G       +    + K GS  +D   P+     +
Sbjct: 13  PYRSS-FSDDLEFDPGQVIDVVSNLDGDWYTGTYVDSDGNRKIGSFPKDFTEPAEDAVFV 71

Query: 106 RRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMK- 164
            R       +      P+PT   HS+  S+G  P+++R      N  E + ++    +  
Sbjct: 72  ER------ASEMALHQPTPTSAVHSRNSSLGYAPSITRSIKSISNNTEHLGADTESYLSA 125

Query: 165 RDYVGSTNSLPRKHRDL 181
            D++ ST+    K  D+
Sbjct: 126 NDFIDSTSEALTKIVDV 142


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 120 DTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGSTNSLPRKHR 179
           D  S     HS+R+   S          NYN+RE+ S +G   + R+   S    P   R
Sbjct: 8   DDSSRPPSVHSERNQKPSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGTMYPMASR 67

Query: 180 D 180
           D
Sbjct: 68  D 68


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 125 TQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGSTNSLP-RKHRDL-- 181
           T+K   KR S+ S  +  + N F ++     +S G ++   DY  ST++ P +K +D   
Sbjct: 46  TRKSPLKRVSITSESSFYKENTFAHHNTTGSNSVGPKKPFLDYHHSTSNTPTKKKKDSFD 105

Query: 182 AASTNSLIRKS 192
            AS  SL R+S
Sbjct: 106 HASVTSLHRRS 116


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 44  VHGRCSTPYRSSLYLHSRESTPGYF 68
           +HG C +PY SS  LH   S P  F
Sbjct: 375 IHGFCPSPYLSSAALHFSISYPASF 399


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 122 PSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSN 158
           P+  Q+ H       S+P +   N FN+ +R+  SSN
Sbjct: 171 PNAMQRPHDLESQPFSYPKIHASNSFNFVKRDIDSSN 207


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 151 RRESISSNGVREMKRDYVGSTNSLPRKHRDLAASTNSL 188
           R  S +SNG+   K     +T+S+P +H    A  N+L
Sbjct: 720 RFPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMHNTL 757


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 123 SPTQKYHSKRH-SMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGSTNSLPRKHRDL 181
           +PTQ+       S  SF + S G+     RR S +S GV    R  + ST  +P +  DL
Sbjct: 149 TPTQRLQGLTSISSSSFDDGSYGS-----RRISFNSQGVSGRLRRNMDSTVIIPSEDEDL 203

Query: 182 AASTNS 187
              +NS
Sbjct: 204 QLPSNS 209


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 6/29 (20%)

Query: 102 PSILRRDRH------SPSVTPPRRDTPSP 124
           PS++R +++      SPSV PPR  TP P
Sbjct: 569 PSVVREEKNYSEPNASPSVIPPRVPTPVP 597


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 97  HPSTFPSILRRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSF 138
           H    P +++    SP     R   PSP    H+K HS+ +F
Sbjct: 186 HTFCGPCLMQALTQSPQCPTCRFGLPSPVVLEHAKSHSITTF 227


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,365
Number of Sequences: 5004
Number of extensions: 55439
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 13
length of query: 254
length of database: 2,362,478
effective HSP length: 71
effective length of query: 183
effective length of database: 2,007,194
effective search space: 367316502
effective search space used: 367316502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)