Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000631-TA|BGIBMGA000631-PA|undefined
(254 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 39 0.004
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 33 0.15
AF025458-2|AAB70978.1| 557|Caenorhabditis elegans Hypothetical ... 33 0.20
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 31 0.60
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 31 0.60
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z69634-7|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 30 1.4
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 30 1.4
U56964-5|AAB54032.1| 454|Caenorhabditis elegans Warthog (hedgeh... 29 4.3
Z49912-1|CAA90140.1| 588|Caenorhabditis elegans Hypothetical pr... 28 7.4
U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedg... 28 7.4
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 28 7.4
U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL021346-1|CAA16154.1| 823|Caenorhabditis elegans Hypothetical ... 28 7.4
Z93378-7|CAB07587.1| 605|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z93375-5|CAB07566.1| 605|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z29094-15|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical p... 27 9.8
Z29094-11|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 27 9.8
Z29094-10|CAA82347.3| 960|Caenorhabditis elegans Hypothetical p... 27 9.8
Z22177-2|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 27 9.8
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 27 9.8
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 27 9.8
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 27 9.8
AL132898-10|CAC14415.1| 390|Caenorhabditis elegans Hypothetical... 27 9.8
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 38.7 bits (86), Expect = 0.004
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 89 GSPARDLEHPSTFPSILRRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFN 148
G P + H S P R S TPPRR + S +K + S S + SR +
Sbjct: 74 GKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSS--SRSRSPVRE 131
Query: 149 YNRR-ESISSNGVREMKRDYVGSTNSLPRKHRDLAAS 184
RR ES S + R++KR+ S + LP K R S
Sbjct: 132 SRRRSESRSPSPKRDLKREASRSRSPLPAKDRSRTRS 168
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 98 PSTFPSILRRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISS 157
P + S R DR S PPR +P P Q++ ++ S P S + +
Sbjct: 130 PPRYHSGPREDRFSDR-NPPREHSPPPPQRFPARERSPAYIPGRSIQSAEKPGNWSKLKK 188
Query: 158 NGVREMKRDYVGSTNSLPRKHRDL 181
N + E R ++ L +K ++
Sbjct: 189 NDLEEKARKHMEMMKELEQKEHEI 212
>AF025458-2|AAB70978.1| 557|Caenorhabditis elegans Hypothetical
protein C01B12.5 protein.
Length = 557
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 105 LRRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFN----YNRRESIS 156
L+RD TP DTP+ T+K HS H GS N++ ++ N Y RR S S
Sbjct: 334 LKRDPFWEDETPQTMDTPTSTRKAHS--HMQGSCINMNEADLDNGLISYVRRRSRS 387
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 31.5 bits (68), Expect = 0.60
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 103 SILRRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVRE 162
S LRR + SP V PRR SP+ + KR S P R + RR S S N +
Sbjct: 475 SPLRRRQSSPMVASPRR-RRSPSPERQRKRRSPSDSPPTRRLSTSPIRRRRSPSPNKLPV 533
Query: 163 MKR 165
+R
Sbjct: 534 RRR 536
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 31.5 bits (68), Expect = 0.60
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 103 SILRRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVRE 162
S LRR + SP V PRR SP+ + KR S P R + RR S S N +
Sbjct: 475 SPLRRRQSSPMVASPRR-RRSPSPERQRKRRSPSDSPPTRRLSTSPIRRRRSPSPNKLPV 533
Query: 163 MKR 165
+R
Sbjct: 534 RRR 536
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/57 (33%), Positives = 23/57 (40%)
Query: 81 RRRDSCKSGSPARDLEHPSTFPSILRRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGS 137
RRR KS R PS S R R SP+ P RR +P + +R S
Sbjct: 453 RRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSS 509
>Z69634-7|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 30.3 bits (65), Expect = 1.4
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 10/152 (6%)
Query: 49 STPYRSSLYLHSRESTPGYFRDAISPTNGLIIRRRDSCKSGSPARDLEHPSTFP-SILRR 107
S YRSS + S G+ + +ISP +R+S + P S S + +
Sbjct: 164 SNDYRSSRHQSPEGSRYGHRQRSISPFRNQQFDQRNSRRDNYPRNQSPRGSRHSRSPINQ 223
Query: 108 DRHSPSVTPPRRDTPSPTQKY-HSKRHSMGSFPNLSRGNIFN-YNR----RESISSNGVR 161
+ +P D S Y ++ ++S P+ SR I N +NR R S S+ R
Sbjct: 224 YSDERNRSPRYNDGRSNQNDYGNTSQYSRNGSPDRSRRQIPNEHNRPSNLRRSRSAERRR 283
Query: 162 EMKRDYVG-STNSLPRKHRDLAASTNSLIRKS 192
R Y G S +L R + L ST S I ++
Sbjct: 284 SPTRSYRGASPRNLARSNSGL--STTSKISRA 313
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 60 SRESTPGYFRDAISPTNGLIIRRRDSCKSGSPARDLEHPSTFPSILRRDRHSPSVTPPRR 119
SR +P RD P G R R + GSP R P PS +PPRR
Sbjct: 45 SRSRSPRR-RDTRPPARGG--RSRSPIRRGSPPRGARADRDRPM-------RPSPSPPRR 94
Query: 120 DTPSPTQKYHSKRHSMGS 137
PSP+ +R GS
Sbjct: 95 RRPSPSPPRRDRRDRSGS 112
>U56964-5|AAB54032.1| 454|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 2 protein.
Length = 454
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 95 LEHPSTFPSILRRDRHSPSVTPPRRDTPSPTQKY 128
+E P+T P+ H PSVT P++ P Q Y
Sbjct: 216 VEQPATTPTASSVVTHQPSVTVPQQGAPLNIQPY 249
>Z49912-1|CAA90140.1| 588|Caenorhabditis elegans Hypothetical
protein T24F1.2 protein.
Length = 588
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 85 SCKSGSPARDLEHPSTFPSILRRDRHSPSVTPPRRDTPSP 124
S ++ A L+H T ILRR H+PS +PP ++ P
Sbjct: 360 SSQNSRNASLLDHDHT---ILRRSPHTPSASPPAMNSSPP 396
>U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 9 protein.
Length = 588
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 83 RDSCKSGSPARDLEHPSTFPSILRRDRHSPSVTP------PRRDT---PSPTQKYHSKRH 133
R S ++ +P+ +P FP+ R+ ++ P P+R P P +
Sbjct: 182 RPSYQNPTPSYQQGYPQQFPAPQRQQQYQPQPQTTNYNQAPQRPLYIPPPPPKLQVYPPQ 241
Query: 134 SMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGSTNSLPRKHRDLAASTNS 187
+ P +R + NY R S +N + + G ++ + + R L+ S
Sbjct: 242 QLAENPYQTRNGVNNYRSRNSYGTNNRKHGRNGKKGKSSKMCKMCRKLSEEDES 295
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/65 (20%), Positives = 36/65 (55%)
Query: 122 PSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGSTNSLPRKHRDL 181
P+P ++ H R S GSF + +G +++++ ++ V++ ++ S +++ ++ +
Sbjct: 988 PTPKKQSHVDRRSRGSFVHYVQGKQQMISQQQNRNAYQVQQQQQPNASSLSTMNEQYEVV 1047
Query: 182 AASTN 186
+TN
Sbjct: 1048 LDNTN 1052
>U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical
protein K02F3.5 protein.
Length = 308
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 77 GLIIRRRDSCKSGSPARDLEHPSTFPSILRRDRHSPSVTPPRRDTPSP 124
G ++R + +P D +P ++P R H S++P R P P
Sbjct: 66 GRSLQRSEFPTDNTPQADYGNPYSYPRPYSRTYHRNSISPIRPPVPMP 113
>AL021346-1|CAA16154.1| 823|Caenorhabditis elegans Hypothetical
protein H37A05.1 protein.
Length = 823
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 85 SCKSGSPARDLEHPSTFPSILRRDRHSPSVTPPRRDTPS 123
S SG +R + PS+ I D ++P+ TPP TP+
Sbjct: 422 SIDSGHVSRGVSQPSS--PISNHDDYTPTTTPPNDKTPT 458
>Z93378-7|CAB07587.1| 605|Caenorhabditis elegans Hypothetical
protein C38C6.6 protein.
Length = 605
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 120 DTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRE-SISSNGVRE 162
+TP +Q Y +K HS+G GN YN ++ I + V++
Sbjct: 231 ETPGVSQCYDAKGHSVGKVVADKNGNTVVYNDKDVPIGTGSVKQ 274
>Z93375-5|CAB07566.1| 605|Caenorhabditis elegans Hypothetical
protein C38C6.6 protein.
Length = 605
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 120 DTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRE-SISSNGVRE 162
+TP +Q Y +K HS+G GN YN ++ I + V++
Sbjct: 231 ETPGVSQCYDAKGHSVGKVVADKNGNTVVYNDKDVPIGTGSVKQ 274
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 223 NTWDSDKDNLVSSPENDDRFSTVHNNKRR 251
N DSD+D L + END+ +S + N+ R
Sbjct: 380 NKKDSDEDELFDTEENDEDWSDLDNSGSR 408
>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
protein F31B12.2 protein.
Length = 1089
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 142 SRGNIFNYNRRESISSNGVREMKRDYVGSTNSLPRKHRDLAASTNSL 188
SR N+FN E + +G ++ + DY+ T + PR + S S+
Sbjct: 323 SRVNLFNMMTFEPSAKSGSQQNEDDYICETCATPRSRSTFSRSAVSV 369
>Z29094-15|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical
protein C07A9.3c protein.
Length = 893
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 111 SPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGS 170
+PS+ R TP+PTQ+ H +S S N ++ N+ + E + D S
Sbjct: 295 TPSLGVNNRGTPTPTQQQH---YSSDSNSNSNQSPPGQGNQSGRMVRTIDEETQTD--SS 349
Query: 171 TNSLPRKHRDLAASTNSLIRKSREHIGSMNS 201
+ ++ D A N +I R I +NS
Sbjct: 350 LSQANPQNADEVAKMNRIIEDHRRQIEELNS 380
>Z29094-11|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 111 SPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGS 170
+PS+ R TP+PTQ+ H +S S N ++ N+ + E + D S
Sbjct: 362 TPSLGVNNRGTPTPTQQQH---YSSDSNSNSNQSPPGQGNQSGRMVRTIDEETQTD--SS 416
Query: 171 TNSLPRKHRDLAASTNSLIRKSREHIGSMNS 201
+ ++ D A N +I R I +NS
Sbjct: 417 LSQANPQNADEVAKMNRIIEDHRRQIEELNS 447
>Z29094-10|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 111 SPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGS 170
+PS+ R TP+PTQ+ H +S S N ++ N+ + E + D S
Sbjct: 362 TPSLGVNNRGTPTPTQQQH---YSSDSNSNSNQSPPGQGNQSGRMVRTIDEETQTD--SS 416
Query: 171 TNSLPRKHRDLAASTNSLIRKSREHIGSMNS 201
+ ++ D A N +I R I +NS
Sbjct: 417 LSQANPQNADEVAKMNRIIEDHRRQIEELNS 447
>Z22177-2|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 40 PRCDVHGRCSTPYRSSLYLHSRESTPG 66
P VHG+CS P+R+S +ST G
Sbjct: 285 PLFAVHGKCSNPHRASQIKAFSDSTNG 311
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 88 SGSPARDLEHPSTFPSILRRDRHSPSVTPPRRDTPSPT------QKYHSKRHSMGSFPN 140
SG P R HPS P R R S S P D P P+ + K HS G+ P+
Sbjct: 93 SGPPHRPHPHPSRRPRPTRLPRPSRS---PHSDAPEPSAATDGFELVFGKHHSTGAPPS 148
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 89 GSPARDLEHPSTFPSILRRDRHSPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFN 148
G P + H S P R S TPPRR + S +K + S S + SR +
Sbjct: 74 GKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSS--SRSRSPVRE 131
Query: 149 YNRR-ESISSNGVREMK 164
RR ES S + R+++
Sbjct: 132 SRRRSESRSPSPKRDLQ 148
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 111 SPSVTPPRRDTPSPTQKYHSKRHSMGSFPNLSRGNIFNYNRRESISSNGVREMKRDYVGS 170
+PS+ R TP+PTQ+ H +S S N ++ N+ + E + D S
Sbjct: 362 TPSLGVNNRGTPTPTQQQH---YSSDSNSNSNQSPPGQGNQSGRMVRTIDEETQTD--SS 416
Query: 171 TNSLPRKHRDLAASTNSLIRKSREHIGSMNS 201
+ ++ D A N +I R I +NS
Sbjct: 417 LSQANPQNADEVAKMNRIIEDHRRQIEELNS 447
>AL132898-10|CAC14415.1| 390|Caenorhabditis elegans Hypothetical
protein Y59A8B.19 protein.
Length = 390
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 90 SPARDLEHPSTFPSILRRDRHSPSVTPPRRDTPSPT 125
+P R L P T P R +P V PPR SPT
Sbjct: 303 APPRALVRPPTVPVNPPRAPVAPPVAPPRPPVRSPT 338
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,743,655
Number of Sequences: 27539
Number of extensions: 299717
Number of successful extensions: 958
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 34
length of query: 254
length of database: 12,573,161
effective HSP length: 80
effective length of query: 174
effective length of database: 10,370,041
effective search space: 1804387134
effective search space used: 1804387134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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