GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000630-TA|BGIBMGA000630-PA|IPR006595|CTLH, C-terminal to
LisH motif
         (551 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   7.3  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   9.6  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 470 QRECDDYIRNLCSSESRQPKSMEQVTDAPAGFSTAAKSQQQ 510
           +R+   + +N  + E +Q K  E+VT   +  +    +QQQ
Sbjct: 197 ERQVKIWFQNRRAKERKQVKKREEVTQKDSPMNMGHLTQQQ 237


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 58   GQWDDVLEFIQPLSALKTFEANKFNYAILRHKYIE 92
            GQWD +   + P+ A        FN     H +IE
Sbjct: 2019 GQWDKITGHVAPMYAHPEDADATFNTNFTIHYWIE 2053


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 299 PFRRPRSAA-DAMTRSLRPLPDGAPRHP 325
           P   PR  A   + R  +P   G P+HP
Sbjct: 112 PLPSPRRVAVPVLVRDGKPCLSGGPKHP 139


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,265
Number of Sequences: 317
Number of extensions: 4809
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 551
length of database: 114,650
effective HSP length: 60
effective length of query: 491
effective length of database: 95,630
effective search space: 46954330
effective search space used: 46954330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)