Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000630-TA|BGIBMGA000630-PA|IPR006595|CTLH, C-terminal to
LisH motif
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 35 0.026
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 29 1.3
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 29 2.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 2.9
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 28 3.9
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 27 5.1
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 27 6.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 27 9.0
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 35.1 bits (77), Expect = 0.026
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 12 DVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQW 60
+V+ L L+FL++ + +LE+ETG++ + +DV L+Q +L G W
Sbjct: 10 EVIHLLLQFLNDYGYDESLKALEKETGLV--SETEDVKRLKQAVLQGDW 56
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 188 KNDRLMQLLIKGILYESCVNYCQAKATGSKEAQSNDVTFSRLLDGSGFDESDLSLLSWLQ 247
KN +L + IL S NY +K+ + + + +GFD S + +LS +
Sbjct: 18 KNSKLENQRLPAILLHSIDNYIDSKSLQRTASVYFSALLALIKQSNGFDYSSIYILSIV- 76
Query: 248 SIPAETFSVPFEQRMLNVDV 267
+PA P ++++L++D+
Sbjct: 77 -MPA----TPSDEKLLHIDL 91
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 28.7 bits (61), Expect = 2.2
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 178 SSSGTISKCAKNDRLMQLLIKGILYESCVNYCQAKATGS---KEAQSNDVTFSRLLDGSG 234
+ SG + K N++ +KG E+ +Y K + K A+ ND+ S++LD G
Sbjct: 16 AKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKENDIPESQVLDAYG 75
Query: 235 FDESDLSLLSWLQSIPAETFSVPFEQRMLNVDVEKLERPSLHTSWTEHMLV-TPIKPR 291
D S L+ + L+++ + ++ E + D+ L R S+ ++ H++ T ++P+
Sbjct: 76 VDASKLTRKTNLETL-GKYIAMDCEMVGVADDMSVLARVSI-VNYHGHVVYDTYVRPK 131
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 218 EAQSNDVTFSRL----LDGSGFDESDLSLLSWLQSIPAETFSVPFEQ 260
E+ NDV SR L S DE + SL +LQ++P + F F Q
Sbjct: 2260 ESDENDVLISRCCTMWLSNSHLDELNNSLQHYLQNLPCKKFIPVFYQ 2306
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 359 SVDRLFDSPTGDGIFEDLN-DTLKPIAEQVKLSEDSPPAKLNE 400
++DRL D P + + LN D +KP ++LS + LNE
Sbjct: 380 TIDRLLDDPIATPLIKQLNPDFVKPSRPFMRLSYEDAIKYLNE 422
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 354 KLMNTSVDRLFDSPTGDGIFEDLNDTLKPIAEQVKLSEDSPPAKLNEGSSIGASNA 409
+L++ + R ++S + +D + +P+ ++ LS+ P +LN SS + +A
Sbjct: 171 RLLDEQIKRAYESAQNNEDNKDGSSREQPVLHEIDLSKKGNPIQLNLSSSSDSHSA 226
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 51 LRQLILDGQ---WDDVLEFIQPLSALKTFEANKFNYAILRHKYI 91
+ Q+ILDG+ WD VLE + P +L++ + +++ Y+
Sbjct: 347 ISQIILDGEMVTWDPVLETVIPYGSLRSIFEDSSSHSSYSPYYV 390
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 480 LCSSESRQPKSMEQVTDAPAGFSTAAKSQQQFANRPPIEEKPREQMLY-----GSVLITG 534
L ++E P + EQ D ++ S+ P E+ P Q +Y S L
Sbjct: 168 LVTAEYTMPSTSEQSEDLFNNGYSSKVSELLRKLSPDNEKPPIVQKIYFTSRTHSQLQQL 227
Query: 535 ISEVKSVNRQTWENPLR 551
+ E+K +N QT+ P+R
Sbjct: 228 VQEIKKLNNQTFSTPIR 244
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,086
Number of Sequences: 5004
Number of extensions: 99348
Number of successful extensions: 255
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 9
length of query: 551
length of database: 2,362,478
effective HSP length: 76
effective length of query: 475
effective length of database: 1,982,174
effective search space: 941532650
effective search space used: 941532650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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