Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000630-TA|BGIBMGA000630-PA|IPR006595|CTLH, C-terminal to
LisH motif
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 39 0.012
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981... 32 1.0
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 30 4.2
10_08_0288 + 16527666-16527837,16527915-16528132,16528491-165285... 29 7.3
09_06_0232 - 21737299-21739233 29 7.3
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 29 7.3
02_01_0144 - 1038547-1039650 29 7.3
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127... 29 7.3
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 29 9.6
02_05_1286 - 35456234-35456677,35456862-35457401 29 9.6
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 38.7 bits (86), Expect = 0.012
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 8 LREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLEFI 67
++ D+ VR+ + L++ + LE E+G+ ++ V R+ +LDG WD + +
Sbjct: 20 IKRDEFVRIITKALYSLGYEKSGAVLEEESGITL--HSPTVNLFRRQVLDGNWDSAVVTL 77
Query: 68 QPLSALKTFEANKFNYAILRHKYIELL 94
+ + L + IL K++ELL
Sbjct: 78 KKVGLLDENIVKSAIFLILEQKFLELL 104
>01_01_1215 +
9815918-9816218,9816772-9816912,9816988-9817106,
9817922-9818191,9818330-9818369,9818519-9818616,
9818745-9818825
Length = 349
Score = 32.3 bits (70), Expect = 1.0
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 439 ERAPPRVEHAVVHATDGDFRRDLLKEYQIQKQRECDDYIRNLCSSESRQPKSMEQVTDAP 498
E PP HA G RR + +E ++Q++ E ++ + + R P + + P
Sbjct: 7 EATPPPQAHAEEEPGRGKRRRVVARETRLQQEEEEEEGASSEPETRPRPPPATPATAEEP 66
Query: 499 AGFSTAAKSQQQFA 512
A + A+++ Q A
Sbjct: 67 AATAAGAEARAQLA 80
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 30.3 bits (65), Expect = 4.2
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 166 PLVEQFLPCDKKSSSGTISKC--AKNDRLMQLLIKGILYESCVNYCQAKATGSKEAQSND 223
PLVE + KSSSG SK A + + ++G Y+S V A + + E SN
Sbjct: 928 PLVESEQK-NHKSSSGLSSKRTNALQNPAVMAAVRGGSYDSTVAKTSASSLVTPEQISNF 986
Query: 224 VTFSRLLDGSGFDESDLSLLSWLQSIPAETFSVPFEQRMLNVDVEKLERPS 274
++ LLD G E + + + Q + ++ V F + + V + +L+ P+
Sbjct: 987 ISNLNLLDQIGIVELN-HIFTHSQRLNSDAI-VAFVKALCKVSMTELQSPT 1035
>10_08_0288 +
16527666-16527837,16527915-16528132,16528491-16528554,
16528749-16528821,16529294-16529371,16529573-16529730,
16530222-16530390,16530531-16530990,16531098-16531478,
16531834-16532037,16532318-16532451,16532937-16533120
Length = 764
Score = 29.5 bits (63), Expect = 7.3
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 42 GNYADDV-LFLRQLILDGQWDDVLEFIQPLS 71
GN D + L+LR L LDG+ D++LE ++ +S
Sbjct: 238 GNCGDPLSLYLRSLCLDGRADELLEALEAMS 268
>09_06_0232 - 21737299-21739233
Length = 644
Score = 29.5 bits (63), Expect = 7.3
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 40 INGNYADDVLFLRQLILDGQWDDVLEFIQPLSALK---TFEANKFNYAILRHKY 90
++G D ++F R ++ D D + F+ LSA EA ++ + +RH Y
Sbjct: 421 MHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVY 474
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 29.5 bits (63), Expect = 7.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 278 SWTEHMLVTPIKPRTFPHLAMPFRRPRSAADAMTRSLRPLPDG-APRHPALMALSAIDY 335
S + +V P P TF +++ F + +D +RPL DG P++ L A +Y
Sbjct: 748 SGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVAANY 806
>02_01_0144 - 1038547-1039650
Length = 367
Score = 29.5 bits (63), Expect = 7.3
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 287 PIKPRTFPHLAMPFRRPRSAADA--MTRSLRPLPDGAPRHPALMALS 331
P+ P + L R RS A A + L P P P PAL+ALS
Sbjct: 100 PLPPHSLSLLLRRLARHRSVAAARGLLAELHPSPASPPPRPALLALS 146
>01_03_0259 -
14312197-14312259,14312384-14312456,14312651-14312754,
14313073-14313192,14313278-14313364,14313925-14314023,
14314110-14314203,14314298-14314368,14315258-14316040
Length = 497
Score = 29.5 bits (63), Expect = 7.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 281 EHMLVTPIKPRTFPHLAMPFRRPRSAADAMTRSLRPLPDGAPRHPALMALSAIDYGPSSS 340
+H L+ P P P P ++ ++ + P P P HP+ + SA GPSSS
Sbjct: 14 DHRLLPSFPPSPPPPSKKPKLAPLPSSSSLADASSPPPSPPPPHPS--SSSAAAQGPSSS 71
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 29.1 bits (62), Expect = 9.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 278 SWTEHMLVTPIKPRTFPHLAMPFRRPRSAADAMTRSLRPLPDGAP 322
S + +V P P TF +++ F + +D +RPL DG P
Sbjct: 574 SGSMEFVVPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNP 618
>02_05_1286 - 35456234-35456677,35456862-35457401
Length = 327
Score = 29.1 bits (62), Expect = 9.6
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 4 THLNLREDDVVRLSLEFLHN----RDLHITQLSLERETGVINGNYADDVLFLRQLILDGQ 59
T++ LR +++RLS +FL N RDLH L+L+ E VI + + FL++L +
Sbjct: 147 TNVGLRLHNLIRLS-QFLSNVTSIRDLH---LNLKSERDVITRFFLEAAPFLKELCIT-I 201
Query: 60 WD 61
WD
Sbjct: 202 WD 203
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,698,903
Number of Sequences: 37544
Number of extensions: 635713
Number of successful extensions: 1607
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1602
Number of HSP's gapped (non-prelim): 11
length of query: 551
length of database: 14,793,348
effective HSP length: 86
effective length of query: 465
effective length of database: 11,564,564
effective search space: 5377522260
effective search space used: 5377522260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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