GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000630-TA|BGIBMGA000630-PA|IPR006595|CTLH, C-terminal to
LisH motif
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)             194   2e-49
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.004
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  

>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score =  194 bits (473), Expect = 2e-49
 Identities = 100/273 (36%), Positives = 153/273 (56%), Gaps = 4/273 (1%)

Query: 1   MPSTHLNLREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQW 60
           M    + L   D+VRL L+F +   LH +  +LE+E+GV N + ++DVLFLRQLILDG+W
Sbjct: 1   MTKAKVALESGDIVRLILQFFNAEKLHKSMRNLEKESGVTNCDLSEDVLFLRQLILDGEW 60

Query: 61  DDVLEFIQPLSALKTFEANKFNYAILRHKYIELLCIRSEIKAYXXXXXXXXXXXXXXXXX 120
           D +L F QPL A + F+  KF Y +LR K++E+L  +S I+                   
Sbjct: 61  DAILTFAQPLEAAEGFDVRKFRYLVLRQKFMEVLYFKSGIEGVSKSYSIEDLIKCLNHLE 120

Query: 121 XXIAPSKEEYSNLCLLLTLPSITDHAQFKKWNPSNARVQCFREVYPLVEQFLPCDKKSSS 180
               P K +Y+ LC LLT+P +++  +++ WNP  AR+QCF EV  ++   +P  KK + 
Sbjct: 121 KD-CPFKSDYTKLCWLLTVPDLSEQPEYQNWNPETARIQCFEEVLEILRAVMPVVKKRTV 179

Query: 181 GTISKCAKNDRLMQLLIKGILYESCVNYCQAKA-TGSKEAQSNDVTFSRLLDGSGFDESD 239
                    DRL  L++KG+ +ESCV YCQ +A  G     +N    S +L G+   ES 
Sbjct: 180 KR-PVTPNEDRLTNLIVKGLCFESCVEYCQQRALNGDFNDDNNFTVSSNILCGTS-HEST 237

Query: 240 LSLLSWLQSIPAETFSVPFEQRMLNVDVEKLER 272
            + +SWL+S+P +++   FE   L+V+   L +
Sbjct: 238 GNFISWLKSLPQDSYVSDFEPMDLDVNFHHLTK 270


>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 6  LNLREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLE 65
          L +   DVVRL  +FL   +L  T  +L+ ETG I  N  D V      I  G WD VL 
Sbjct: 3  LEVESADVVRLVQQFLKENNLPRTLATLQEETG-ITLNTVDSVESFVNEINSGHWDTVLT 61

Query: 66 FIQPL 70
           IQ L
Sbjct: 62 AIQSL 66


>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 13/134 (9%)

Query: 288 IKPRTFPHLAMPFRRPRSAADAMTRSLRPL--PDGAPRHPALMALSAIDYGPSSSCFAGF 345
           +KPR  P L  PF  P          +  +  PD  P+    + +  ++  P S     +
Sbjct: 594 LKPRKMPKLVKPFVTPSLVVSEPKPKVSKVRKPDAGPK----VIVEHLEQVPKSQKARLY 649

Query: 346 HLTGIKGSKLMNTSVDRLFDSPTGDGIFEDLNDTLKPIAEQVKLSEDSPPAKLNEGSSIG 405
            +T  K  K   +++ R+FDS   D   ED+ND ++  AE   L  D    K     S  
Sbjct: 650 PVTTNKARK---SAIKRIFDSDEEDE--EDINDDIE--AELANLDRDIEEMKQTLTESPS 702

Query: 406 ASNATTPEHRAQDY 419
           A      E   +++
Sbjct: 703 ACGNQAEERLVENF 716


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002,439
Number of Sequences: 59808
Number of extensions: 723414
Number of successful extensions: 1921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1918
Number of HSP's gapped (non-prelim): 3
length of query: 551
length of database: 16,821,457
effective HSP length: 86
effective length of query: 465
effective length of database: 11,677,969
effective search space: 5430255585
effective search space used: 5430255585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)