GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000630-TA|BGIBMGA000630-PA|IPR006595|CTLH, C-terminal to
LisH motif
         (551 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    28   0.75 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   5.3  
AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding pr...    25   5.3  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        25   6.9  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   9.2  

>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 27.9 bits (59), Expect = 0.75
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 372 IFEDLNDT---LKPIAEQVKLSEDSPPAKL 398
           + ED+ND     KP A  ++++EDSPP  L
Sbjct: 159 LVEDINDNEPIFKPFASVLEVAEDSPPGIL 188


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 190  DRLMQLLIKGILYESCVNYCQAKATGSKEAQSNDVTFSRLLDGSGFDESDLSLLSWLQSI 249
            D ++  LI   LYE    +     T  + A  N+  F+ L    GF +  L L   LQ +
Sbjct: 2025 DAILDYLITRHLYEDRRQHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEV 2084


>AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP29 protein.
          Length = 176

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 446 EHAVVHATDGDFRRDLLKEYQIQKQREC 473
           +H V+H    D R   L+E+ +   +EC
Sbjct: 106 KHKVLHVITKDIREHELREFYVDSIQEC 133


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 443 PRVEHAVVHATDGDFRRDLLKE--YQIQKQRECDDYIRNLCSSESRQPKSMEQVTDAPAG 500
           P   H++ H  +GD R  ++KE   Q + +     Y        S + + M +   +PA 
Sbjct: 36  PGSRHSIRHGRNGDKRSRMIKELYQQTEPKSHRPSYANKAVLLSSAKWEQMWKKVVSPAE 95

Query: 501 FSTAAKSQQQ 510
             T    QQ+
Sbjct: 96  KETEVLCQQE 105


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 9.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 247  QSIPAETFSVPFEQRMLNVDVEKLERPSLHTSWTE 281
            Q +    +  P   R+  +  + +ERP L T WT+
Sbjct: 1699 QPVQVLEYESPDTVRVREILYDDIERPILQTKWTK 1733


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,703
Number of Sequences: 2123
Number of extensions: 21497
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 7
length of query: 551
length of database: 516,269
effective HSP length: 67
effective length of query: 484
effective length of database: 374,028
effective search space: 181029552
effective search space used: 181029552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)