Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000630-TA|BGIBMGA000630-PA|IPR006595|CTLH, C-terminal to
LisH motif
(551 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical ... 269 3e-72
AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical ... 269 3e-72
AF039038-9|AAO12408.1| 559|Caenorhabditis elegans Hypothetical ... 56 6e-08
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 41 0.002
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 41 0.002
AL034365-7|CAA22259.1| 421|Caenorhabditis elegans Hypothetical ... 36 0.074
AL033514-15|CAA22101.1| 540|Caenorhabditis elegans Hypothetical... 35 0.17
U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical pr... 29 8.5
>AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical
protein K06A5.8a protein.
Length = 874
Score = 269 bits (660), Expect = 3e-72
Identities = 136/317 (42%), Positives = 186/317 (58%), Gaps = 5/317 (1%)
Query: 8 LREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLEFI 67
+RE DV++ LEFL R LHITQLSLERE GVING ++DD+LFLRQLILDGQWD+ L+F+
Sbjct: 26 IRERDVIKAILEFLEIRGLHITQLSLEREAGVINGAFSDDLLFLRQLILDGQWDNALDFV 85
Query: 68 QPLSALKTFEANKFNYAILRHKYIELLCIRSEIKAYXXXXXXXXXXXXXXXXXXXIAPSK 127
+PL + F+ F Y I ++K+ ELLC++ E I P+
Sbjct: 86 EPLKPVNEFDFGAFRYNITKYKFFELLCVKLEPGPLHDNDFAVEELVECLKDLEHICPTP 145
Query: 128 EEYSNLCLLLTLPSITDHAQFKKWNPSNARVQCFREVYPLVEQFLPCDKKSSSGTISKCA 187
E+Y +LC LLTLP ++DH FK WNPS+ARV+CF +V L LP K +
Sbjct: 146 EDYRHLCALLTLPKLSDHEDFKNWNPSSARVECFNKVNQLCGHLLPPTGKEKDRGDDANS 205
Query: 188 KNDRLMQLLIKGILYESCVNYCQAKATGSKEA-QSNDVTFSRLLDGSGFDESDLSLLSWL 246
NDRL L+ KG YE CV+YCQA+A G K + + L +DLSL+ WL
Sbjct: 206 SNDRLTGLITKGRFYEGCVDYCQAQAIGDKRGIDAGPMPSEMLTFRPKLGSADLSLVCWL 265
Query: 247 QSIPAETFSVPFEQRMLNVDVEKLERPSLHTSWTEHMLVTPIKP-RTFPHLAMPFRRPRS 305
+ + E FS+PF+Q+ L + V+ + +P L WTE ++ TPIKP FPH +P + +
Sbjct: 266 EMVGKEQFSMPFKQKQLELKVDHIRKPKLEAPWTETIMATPIKPGGQFPHNLVPSSKLKF 325
Query: 306 A---ADAMTRSLRPLPD 319
A + +MT S+ P D
Sbjct: 326 AEKMSQSMTMSMLPPAD 342
>AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical
protein K06A5.8b protein.
Length = 942
Score = 269 bits (660), Expect = 3e-72
Identities = 136/317 (42%), Positives = 186/317 (58%), Gaps = 5/317 (1%)
Query: 8 LREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLEFI 67
+RE DV++ LEFL R LHITQLSLERE GVING ++DD+LFLRQLILDGQWD+ L+F+
Sbjct: 26 IRERDVIKAILEFLEIRGLHITQLSLEREAGVINGAFSDDLLFLRQLILDGQWDNALDFV 85
Query: 68 QPLSALKTFEANKFNYAILRHKYIELLCIRSEIKAYXXXXXXXXXXXXXXXXXXXIAPSK 127
+PL + F+ F Y I ++K+ ELLC++ E I P+
Sbjct: 86 EPLKPVNEFDFGAFRYNITKYKFFELLCVKLEPGPLHDNDFAVEELVECLKDLEHICPTP 145
Query: 128 EEYSNLCLLLTLPSITDHAQFKKWNPSNARVQCFREVYPLVEQFLPCDKKSSSGTISKCA 187
E+Y +LC LLTLP ++DH FK WNPS+ARV+CF +V L LP K +
Sbjct: 146 EDYRHLCALLTLPKLSDHEDFKNWNPSSARVECFNKVNQLCGHLLPPTGKEKDRGDDANS 205
Query: 188 KNDRLMQLLIKGILYESCVNYCQAKATGSKEA-QSNDVTFSRLLDGSGFDESDLSLLSWL 246
NDRL L+ KG YE CV+YCQA+A G K + + L +DLSL+ WL
Sbjct: 206 SNDRLTGLITKGRFYEGCVDYCQAQAIGDKRGIDAGPMPSEMLTFRPKLGSADLSLVCWL 265
Query: 247 QSIPAETFSVPFEQRMLNVDVEKLERPSLHTSWTEHMLVTPIKP-RTFPHLAMPFRRPRS 305
+ + E FS+PF+Q+ L + V+ + +P L WTE ++ TPIKP FPH +P + +
Sbjct: 266 EMVGKEQFSMPFKQKQLELKVDHIRKPKLEAPWTETIMATPIKPGGQFPHNLVPSSKLKF 325
Query: 306 A---ADAMTRSLRPLPD 319
A + +MT S+ P D
Sbjct: 326 AEKMSQSMTMSMLPPAD 342
>AF039038-9|AAO12408.1| 559|Caenorhabditis elegans Hypothetical
protein K06A5.8d protein.
Length = 559
Score = 56.0 bits (129), Expect = 6e-08
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 252 ETFSVPFEQRMLNVDVEKLERPSLHTSWTEHMLVTPIKP-RTFPHLAMPFRRPRSA---A 307
E FS+PF+Q+ L + V+ + +P L WTE ++ TPIKP FPH +P + + A +
Sbjct: 5 EQFSMPFKQKQLELKVDHIRKPKLEAPWTETIMATPIKPGGQFPHNLVPSSKLKFAEKMS 64
Query: 308 DAMTRSLRPLPD 319
+MT S+ P D
Sbjct: 65 QSMTMSMLPPAD 76
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 41.1 bits (92), Expect = 0.002
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 6 LNLREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLE 65
+ + DV+RL +FL +LH T L+ ET V + N D + I G WD+VL+
Sbjct: 4 IEIESSDVIRLIEQFLKESNLHRTLAILQEETNV-SLNTVDSIDGFCNEITSGNWDNVLK 62
Query: 66 FIQPL 70
+Q L
Sbjct: 63 TVQSL 67
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 41.1 bits (92), Expect = 0.002
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 6 LNLREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLE 65
+ + DV+RL +FL +LH T L+ ET V + N D + I G WD+VL+
Sbjct: 4 IEIESSDVIRLIEQFLKESNLHRTLAILQEETNV-SLNTVDSIDGFCNEITSGNWDNVLK 62
Query: 66 FIQPL 70
+Q L
Sbjct: 63 TVQSL 67
>AL034365-7|CAA22259.1| 421|Caenorhabditis elegans Hypothetical
protein Y69E1A.7 protein.
Length = 421
Score = 35.9 bits (79), Expect = 0.074
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 490 SMEQVTDAPAGFSTAAKSQQQFANRPPIEEKPREQMLY 527
S+ VTD P F+ + KS Q NRPP KP E+M+Y
Sbjct: 66 SVVAVTDTPFEFAPSQKSSQH-TNRPPPFVKPEEEMMY 102
>AL033514-15|CAA22101.1| 540|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 540
Score = 34.7 bits (76), Expect = 0.17
Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 37/262 (14%)
Query: 254 FSVPFEQRMLNVDVEKLERPSLHTSWTEHMLVTPIKPR--------TFPHLAMPFRRPR- 304
+ +P + L V EK + + T +H+++ P+ PR PH+ M RPR
Sbjct: 214 YQIPITYQELVVRYEKKHKKT--TKPPQHLIILPLPPRRASPAPPRVIPHVIMQPPRPRP 271
Query: 305 --SAADAMTRSLRPLPDGAPRHPALMALSAIDYGPSSSCFAG------FHLTGIKGSKLM 356
S AD T + + LP PR A M + S AG +T K
Sbjct: 272 PISTADLCTPAFQQLP--PPREEA-MEIDKSSESSEHSTIAGAGEAGSITVTASSSEKSP 328
Query: 357 -----NTSVDRLFDSPTGDGIFEDL-NDTLKPIAEQVKLS-EDSPPAKLNEG-SSIGASN 408
+ S D + P+ D +DL D P AE+ L D+ P +E + + AS
Sbjct: 329 ADSQGSASPDESTEEPSQDHTPQDLPMDQAPPQAEEDLLERSDADPGSRDESQNDVTASL 388
Query: 409 ATTPEHRAQDYXXXXXXXXXXXXXERSSL------AERAPPRV-EHAVVHATDGDFRRDL 461
+ E +QD+ ++APP E ++ +D DF
Sbjct: 389 DGSTEEASQDHTEFVADTPGAGDESTDDALNLPMDTDQAPPHAGEEDLLERSDADFFAPR 448
Query: 462 LKEYQIQKQRECDDYIRNLCSS 483
+++ ++ +D +L S
Sbjct: 449 VRDESQNDSQDSEDVTASLDGS 470
>U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical
protein F28B4.2 protein.
Length = 860
Score = 29.1 bits (62), Expect = 8.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 349 GIKGSKLMNTSVDRLFDSP--TGDGIFEDLNDTLKPIAEQVKLSEDSPPAKLNEGSSIGA 406
G + + + N+++ RLF+S + D + N T + S +S +N GSS+
Sbjct: 520 GSQSTPVKNSTLSRLFNSSRTSEDSGSHNGNGTWHQHSHSYSSSTNSQIPSINTGSSLNI 579
Query: 407 SNATTPEH 414
S+ P+H
Sbjct: 580 SDGGVPQH 587
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,283,812
Number of Sequences: 27539
Number of extensions: 545388
Number of successful extensions: 1396
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1386
Number of HSP's gapped (non-prelim): 8
length of query: 551
length of database: 12,573,161
effective HSP length: 85
effective length of query: 466
effective length of database: 10,232,346
effective search space: 4768273236
effective search space used: 4768273236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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