GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000630-TA|BGIBMGA000630-PA|IPR006595|CTLH, C-terminal to
LisH motif
         (551 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   2.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 127 KEEYSNLCLLLTLPSITDH 145
           KE YSN+C L   P + D+
Sbjct: 212 KETYSNMCALCEKPEVCDY 230


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 127 KEEYSNLCLLLTLPSITDH 145
           KE YSN+C L   P + D+
Sbjct: 212 KETYSNMCALCEKPEVCDY 230


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 127 KEEYSNLCLLLTLPSITDH 145
           KE YSN+C L   P + D+
Sbjct: 212 KETYSNMCALCEKPEVCDY 230


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 168 VEQFLPCDKKSSSGTISKCAKNDRLMQLLIKG 199
           V  FL   + + +GTI KC ++    Q++I G
Sbjct: 236 VSNFLSSTRTAETGTIRKCDESSPHDQVIIGG 267


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 531 LITGISEVKSVNRQTWENPLR 551
           +ITG+ +  S N   W NP R
Sbjct: 827 MITGVGKATSPNLTKWGNPNR 847


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,811
Number of Sequences: 429
Number of extensions: 6231
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 551
length of database: 140,377
effective HSP length: 61
effective length of query: 490
effective length of database: 114,208
effective search space: 55961920
effective search space used: 55961920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)