GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000630-TA|BGIBMGA000630-PA|IPR006595|CTLH, C-terminal to
LisH motif
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ...    36   0.070
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea...    35   0.16 
At3g21450.1 68416.m02706 protein kinase family protein contains ...    32   0.86 
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea...    31   1.5  
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea...    31   2.6  
At2g26580.2 68415.m03189 plant-specific transcription factor YAB...    29   8.0  
At2g26580.1 68415.m03188 plant-specific transcription factor YAB...    29   8.0  

>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
           WD-40 repeats (PF00400) (2 weak)
          Length = 1108

 Score = 35.9 bits (79), Expect = 0.070
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 18/161 (11%)

Query: 12  DVVRLSLEFLHNRDLHITQLSLERETGVI-NGNYADDVLFLRQLILDGQWDDVLEFIQPL 70
           ++V L L+FL       +   LE+E+G   N  Y D+       +L G+WDDV  ++   
Sbjct: 7   ELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEK------VLAGEWDDVETYLSGF 60

Query: 71  SALKTFE-ANKFNYAILRHKYIELLCIRSEIKAYXXXXXXXXXXXXXXXXXXXIAPSKEE 129
           + +     + K  + I + KY+E L  + + KA                       ++E 
Sbjct: 61  TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTF---------NEEL 111

Query: 130 YSNLCLLLTLPSITDHAQFKKW-NPSNARVQCFREVYPLVE 169
           Y  +  LLTL +  ++ Q  K+ +   AR     E+  L+E
Sbjct: 112 YKEITQLLTLQNFRENEQLSKYGDTKTARGIMLGELKKLIE 152


>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to will die slowly protein (WDS) (SP:Q9V3J8)
           [Drosophila melanogaster]
          Length = 589

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 8   LREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLEFI 67
           +R+ + VR+    L++     T   LE E+G+   N +   LFL+Q + DG+WD  ++ +
Sbjct: 63  IRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHN-STIKLFLQQ-VKDGKWDQSVKTL 120

Query: 68  QPLSALKTFEANKFNYAILRHKYIELL 94
             +           ++ +L  K++E L
Sbjct: 121 HRIGFPDEKAVKAASFLLLEQKFLEFL 147


>At3g21450.1 68416.m02706 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 270

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 234 GFDESDLSLLSWLQSIPAETFSVPFEQRMLNVDVEKLERPSLH 276
           G  +SD  +L W  +IPAETF+ P  Q  L +  E LE P ++
Sbjct: 193 GLLQSDYEVLQW--NIPAETFTRPSFQAYLIITSECLEYPPIN 233


>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
           family protein contains Pfam PF00400: WD domain, G-beta
           repeat (3 repeats)
          Length = 717

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 11/90 (12%)

Query: 10  EDDVVRLSLEFLHNRDLHITQLSLERETGV-INGNYADDVLFLRQLILDGQWDDVLEFIQ 68
           ++D++ L L+FL+      T   LE+ET V  N NY  +V+ L      G++    E+  
Sbjct: 175 KEDLICLILQFLYEAKYKNTLHKLEQETKVFFNLNYLAEVMKL------GEYGKAEEY-- 226

Query: 69  PLSALKTFEANKFNYAILRHKYIELLCIRS 98
            L A   +E NK++ A+   +  +L+C++S
Sbjct: 227 -LGAFTNWEDNKYSKAMFL-ELQKLICLQS 254


>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
          family protein contains 5 WD-40 repeats (PF00400);
          similar to Will die slowly protein
          (SP:Q9V3J8)[Drosophila melanogaster]
          Length = 511

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 6  LNLREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLE 65
          L +   DV+++ L+F     L+ T  +L+ E  V + N  D V      I  G+WD VL 
Sbjct: 3  LEIEARDVIKIMLQFCKENSLNQTFQTLQSECQV-SLNTVDSVETFISDINSGRWDSVLP 61

Query: 66 FIQPL 70
           +  L
Sbjct: 62 QVSQL 66


>At2g26580.2 68415.m03189 plant-specific transcription factor YABBY
           family protein contains Pfam profile: PF04690 YABBY
           protein
          Length = 164

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 495 TDAPAGFSTAAKSQQQFANRPPIEEKPREQMLYGSVLITGISEVKSVN 542
           T  P+  ST   ++Q+  NRPP E++ R    Y   +   I  +K+ N
Sbjct: 81  TKIPSRISTRTITEQRIVNRPP-EKRQRVPSAYNQFIKEEIQRIKANN 127


>At2g26580.1 68415.m03188 plant-specific transcription factor YABBY
           family protein contains Pfam profile: PF04690 YABBY
           protein
          Length = 164

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 495 TDAPAGFSTAAKSQQQFANRPPIEEKPREQMLYGSVLITGISEVKSVN 542
           T  P+  ST   ++Q+  NRPP E++ R    Y   +   I  +K+ N
Sbjct: 81  TKIPSRISTRTITEQRIVNRPP-EKRQRVPSAYNQFIKEEIQRIKANN 127


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,614
Number of Sequences: 28952
Number of extensions: 512186
Number of successful extensions: 1343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 8
length of query: 551
length of database: 12,070,560
effective HSP length: 85
effective length of query: 466
effective length of database: 9,609,640
effective search space: 4478092240
effective search space used: 4478092240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)