GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000629-TA|BGIBMGA000629-PA|IPR011129|Cold shock protein,
IPR002059|Cold-shock protein, DNA-binding, IPR008994|Nucleic
acid-binding, OB-fold
         (776 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    26   1.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    25   1.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   1.5  

>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 180 FSETKCKEELTLGDDVEFIIQTRNGKEVACNITKLPSGSV 219
           + E   KE L L   V FI +      V CN  KLP  ++
Sbjct: 64  YLERAIKESLRLYPSVHFISRKLGEDFVTCNGLKLPKSTI 103


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 147 PVHPVKYHGVVCSMKENFGFIERAD 171
           PVHPV+ + ++    E + F+  AD
Sbjct: 376 PVHPVRVNTIISFSGERYDFVINAD 400


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 147 PVHPVKYHGVVCSMKENFGFIERAD 171
           PVHPV+ + ++    E + F+  AD
Sbjct: 376 PVHPVRVNTIISFSGERYDFVINAD 400


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,085
Number of Sequences: 317
Number of extensions: 7088
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 776
length of database: 114,650
effective HSP length: 62
effective length of query: 714
effective length of database: 94,996
effective search space: 67827144
effective search space used: 67827144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)