GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000629-TA|BGIBMGA000629-PA|IPR011129|Cold shock protein,
IPR002059|Cold-shock protein, DNA-binding, IPR008994|Nucleic
acid-binding, OB-fold
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    28   4.3  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    28   5.7  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   7.5  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   9.9  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   9.9  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/42 (40%), Positives = 19/42 (45%)

Query: 372 FSNMNTRQSAIRIKHLSPGTVQFETLIERGVRGVVTKEAQVY 413
           F NMNT       K+L P T     LI  G R +  KEA  Y
Sbjct: 260 FRNMNTWDILEDTKNLEPDTSIVNDLISLGFRDIHAKEACQY 301


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 162 ENFGFIERADVVKEIFFHFSETKC-KEELTLGDDVEFIIQ 200
           ENFGF +   V       FS  KC K+ L   +D EF +Q
Sbjct: 613 ENFGFTDNNSVPPLTDLAFSAAKCFKDILRAIEDAEFSVQ 652


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 694 TVEFVMLTNPRNGKSSACNVVKIASKGKV 722
           T+EF+ +  P NG++S   +V+ A   KV
Sbjct: 102 TIEFMKINEPLNGQTSTTAIVQFAPPPKV 130


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 1   MSSNPQWKMFQPPDSHSSPLQDILDLQHSNMQHKSSYRNGDPVEFEMTYDRRTGKPIAST 60
           +SS+  W+ FQP DS +S   D+   Q  + ++        PV +E   +  +G+ I S 
Sbjct: 544 ISSDIYWEQFQPWDSSTS---DVTSSQRLDDENGFLTLLEPPVNYENEVESSSGENIVSM 600

Query: 61  VT 62
            T
Sbjct: 601 YT 602


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 399 ERGVRGVVTKEAQVYNNTGSPTRQPPPDTNGLISCQINQTKKSLPFMAKKCESKMLPRVG 458
           E+  R + T   Q  NN GSP   P P   GL S  I +  K+  F A +  SK +P V 
Sbjct: 112 EKPRRSLPTAAGQ--NNIGSPPTPPGPFPGGL-STDIQEKLKA--FHASR--SKSMPEVV 164

Query: 459 DKVT 462
           +K++
Sbjct: 165 NKIS 168


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,293
Number of Sequences: 5004
Number of extensions: 138623
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 6
length of query: 776
length of database: 2,362,478
effective HSP length: 78
effective length of query: 698
effective length of database: 1,972,166
effective search space: 1376571868
effective search space used: 1376571868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)