GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000629-TA|BGIBMGA000629-PA|IPR011129|Cold shock protein,
IPR002059|Cold-shock protein, DNA-binding, IPR008994|Nucleic
acid-binding, OB-fold
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0158 - 1103461-1104186                                           33   0.65 
09_02_0043 - 3444713-3444811,3445077-3445137,3446042-3446090,344...    32   2.0  
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282...    31   2.6  
08_01_0202 - 1638978-1639571                                           30   6.1  

>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 33.5 bits (73), Expect = 0.65
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 162 ENFGFIERADVVKEIFFHFSETKCK--EELTLGDDVEFII-QTRNGKEVACNITKLPSGS 218
           + FGFI   D  +++F H S  K      L  G+ VEF I ++ +G+  A ++T  P GS
Sbjct: 18  KGFGFISPDDGSEDLFVHQSSIKADGFRSLAEGEQVEFAISESEDGRTKAVDVTG-PDGS 76

Query: 219 VV 220
            V
Sbjct: 77  FV 78


>09_02_0043 -
           3444713-3444811,3445077-3445137,3446042-3446090,
           3446703-3447054,3448231-3448359,3449550-3449555
          Length = 231

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 661 VFGFLSVDGEDTRRLFFHMSEVRGNPSELQSGDTVEFVMLTNPRNGKSSACNVV 714
           ++G+++V  +  + L + ++  R NP  ++ GD +E   +T P+ G S  C+V+
Sbjct: 15  LYGYIAVRDDLDKLLNYVVNYSRDNPIIMRQGDLIE---MTGPKRGISMCCSVL 65


>05_01_0361 -
           2824728-2826043,2826288-2826507,2827616-2827702,
           2827726-2827980,2828704-2828733
          Length = 635

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 11  QPPDSHSSPLQDILDLQHSNMQHKSSYRNGDPV 43
           QPP+S  S +  +L  +     H SS R+GDPV
Sbjct: 468 QPPESSPSRVNPVLLCETGQRHHYSSVRHGDPV 500


>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 30.3 bits (65), Expect = 6.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 510 GFGFIETSDHTKEVFFHFSNLEGSP-ENLELGIEVEYSLGRLN 551
           GFGFI   D  +++F H S+L+     +L  G  VE+S+G  N
Sbjct: 18  GFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGN 60


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,393,637
Number of Sequences: 37544
Number of extensions: 940757
Number of successful extensions: 1727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1725
Number of HSP's gapped (non-prelim): 6
length of query: 776
length of database: 14,793,348
effective HSP length: 88
effective length of query: 688
effective length of database: 11,489,476
effective search space: 7904759488
effective search space used: 7904759488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)