GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000629-TA|BGIBMGA000629-PA|IPR011129|Cold shock protein,
IPR002059|Cold-shock protein, DNA-binding, IPR008994|Nucleic
acid-binding, OB-fold
         (776 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            26   4.3  
AY748847-1|AAV28193.1|  104|Anopheles gambiae cytochrome P450 pr...    25   5.7  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    25   5.7  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 108  YTKDDVEGNVTLRTGDAVSFQIATNQRGTLGACHIRFENPVHPVKYHGVVCSMKENFGFI 167
            Y  D+    +  RT D   +Q   +++G L     RF   +H  K H        +F ++
Sbjct: 1918 YNYDNANRLIRKRTPDGGIWQYLYDKQGIL-----RFS--LH--KEHNETLDRVIHFTYV 1968

Query: 168  ERADVVKEIFFHFSETKCKEELTLG 192
                V +E   H +ET+C E +  G
Sbjct: 1969 SDDKVAREALVHLNETECIELVDSG 1993


>AY748847-1|AAV28193.1|  104|Anopheles gambiae cytochrome P450
           protein.
          Length = 104

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 126 SFQIATNQRGTLGACHIRFENPVHPVKYHGVVCSMKENFGFIERADVVKEI-FFHFSETK 184
           +F    +   T G C   F   +HP   H V   +   FG  +RA  ++++      E  
Sbjct: 31  TFMFEGHDTTTAGMCWALFLLALHPDIQHQVHQEIDSIFGGSDRAPTMRDLNEMKLLERC 90

Query: 185 CKEELTLGDDVEF 197
            KE L L   V F
Sbjct: 91  LKETLRLYPSVSF 103


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 171 DVVKEIFFHFSETKC-KEELTLGDDV 195
           DVVKE FFHF      K +L++ D++
Sbjct: 9   DVVKESFFHFIRKHIPKADLSIVDEI 34


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,027
Number of Sequences: 2123
Number of extensions: 31466
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 4
length of query: 776
length of database: 516,269
effective HSP length: 69
effective length of query: 707
effective length of database: 369,782
effective search space: 261435874
effective search space used: 261435874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)