GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000629-TA|BGIBMGA000629-PA|IPR011129|Cold shock protein,
IPR002059|Cold-shock protein, DNA-binding, IPR008994|Nucleic
acid-binding, OB-fold
         (776 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    32   1.3  
Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...    31   4.1  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    30   7.2  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     30   7.2  

>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 10/70 (14%)

Query: 159 SMKENFGFIERADVVKEIFFH-----FSETKCKEELTLGDDVEF---IIQTRNGKEVACN 210
           S+   +GFI R D  K+IF H      S T+     TLGDD E    +++ +NG E A N
Sbjct: 74  SVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPE-AAN 132

Query: 211 ITKLPSGSVV 220
           +T  P+G  V
Sbjct: 133 VTG-PNGDNV 141


>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 145 ENPVHPVKYHGVV--CSMKENFGFIERADVVKEIFFH----FSETKCKEELTLGDDVEFI 198
           + PV   K  G V   ++K  +GFI R D  ++IF H     +    K   +LGD+ E +
Sbjct: 13  DKPVKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVM 72

Query: 199 IQTRNGKE--VACNITKLPSGSV 219
                G +   A ++T    G V
Sbjct: 73  FDIVEGSKGLEAASVTGPDGGPV 95


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 498 PIMQGFIAALKDGFGFIETSDHTKEVFFHFSNLEGSPENLELGIEVEYSLGRLNGS 553
           PI  G    +   +G +E   H K  + +F  L G    L+  +E+   L RLNG+
Sbjct: 169 PIKWGSFEIINSVYGCLEFLSHLKSDWKYFQYLSGVDIPLKTNLEMVRILKRLNGT 224


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 498 PIMQGFIAALKDGFGFIETSDHTKEVFFHFSNLEGSPENLELGIEVEYSLGRLNGS 553
           PI  G    +   +G +E   H K  + +F  L G    L+  +E+   L RLNG+
Sbjct: 61  PIKWGSFEIINSVYGCLEFLSHLKSDWKYFQYLSGVDIPLKTNLEMVRILKRLNGT 116


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,613,630
Number of Sequences: 27539
Number of extensions: 787917
Number of successful extensions: 1641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1637
Number of HSP's gapped (non-prelim): 7
length of query: 776
length of database: 12,573,161
effective HSP length: 87
effective length of query: 689
effective length of database: 10,177,268
effective search space: 7012137652
effective search space used: 7012137652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)