Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000628-TA|BGIBMGA000628-PA|IPR000615|Bestrophin
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 34 0.044
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 33 0.077
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 32 0.18
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.54
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 30 0.94
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 1.6
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 29 2.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 2.2
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 28 2.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 3.8
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 5.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 6.7
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 8.8
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 34.3 bits (75), Expect = 0.044
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 291 QISRMGSVRSASTAYSSGGLFGRNRHNSVVYSSPEAGQPVAX---XXXXXKMSLYERLVG 347
QISR+ V S Y+ + R H + VYS + G V+ K ++++
Sbjct: 671 QISRISQVNSLLNDYN----YNRQSHITRVYSGTDDGSSVSIFEDTSSSTKQKIFDQPTT 726
Query: 348 RKSGRGQHRQNSRHGGQKSNGSAVPITLRNRPRIPTPDVTKEVMDREN---RIAMGMQNM 404
+ RQ S G KS+GS +P T + + V + N R+ + ++
Sbjct: 727 NDCDVMRPRQYSYSAGMKSDGSLLPSTKHTSLSSSSTSTSLSVRNTTNVKIRLRLHEVSL 786
Query: 405 GVIMAH 410
+++AH
Sbjct: 787 VLVVAH 792
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 33.5 bits (73), Expect = 0.077
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 466 TAPVNLTPMGVSQ-LTTIVSSAPSTPRAERGPADGSGGS--PQSPRATITELPPSDRESN 522
T+ V +TP G + TT+V + P+T +E P G+ G+ ++ T TE+ P+ +
Sbjct: 1117 TSTVTVTPTGTATGTTTVVINTPTTTGSEVLPTTGATGTAGTETQLTTATEVQPTTGATG 1176
Query: 523 HSGT 526
+GT
Sbjct: 1177 TAGT 1180
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 32.3 bits (70), Expect = 0.18
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 262 PRKSHDETYADYESVDTPLVERRKNWFQRQISRMGSVRSASTAYSSGGLFGR 313
P SH +T A YE+ +P RK +R SRMGS A LF R
Sbjct: 545 PSSSHLQTAAAYENSISPFASFRKKEAERAYSRMGSFERIVYALLRTLLFSR 596
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.54
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 456 APGGLTPMLTTAPVNLTPMG--VSQLTTIVSSAPSTPRAERGPADGSGGSPQSPRATITE 513
AP L PM A L P L + +AP P A P +P +P A+I E
Sbjct: 435 APPSL-PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAE 493
Query: 514 LPPSDRESN 522
LP D +N
Sbjct: 494 LPQQDGRAN 502
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 29.9 bits (64), Expect = 0.94
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 140 APGSTSKYEPDVYFPLFTALQFCFYVGWLKVAEVLINPF 178
A GS Y PD Y P+ + + FYV L +L + F
Sbjct: 319 ASGSYRLYLPDSYIPIHPVVAYAFYVWILPAFRILFSIF 357
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 447 TTALAQAVLAPGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPSTPRAERGPADGSGGSPQS 506
T +AQ PG T + TT V TP+ + +TT S+ ST + + S
Sbjct: 14 TAVMAQTEYTPGFTTDVATT--VTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVP 71
Query: 507 P-----RATITELPPSDRESNHSGTPP 528
P +T T +PP+ + + PP
Sbjct: 72 PPSTSHNSTTTTVPPTTSMNTTTTVPP 98
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 230 VASEHYRRHEPPCSADHYKVKAEDAVYANVQAP 262
+ S H RHEPP S + ED Y + P
Sbjct: 88 IVSHHAHRHEPPVSDQPVGIVHEDESYVVIDKP 120
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.7 bits (61), Expect = 2.2
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 465 TTAPVNLTPMGVSQLTTIVSSAPSTPRAERGPADG-SGGSP--QSPRATITELPPSDRES 521
TTA N PM + QL + +APS R P G S P S ++++ LPP +
Sbjct: 858 TTAGWNDAPM-LGQLP-MRRAAPSMAPV-RSPFPGASSAQPAAMSRTSSVSTLPPPPPTA 914
Query: 522 NHSGTPPDFARKPGSKRGEVY 542
+ + + P A P K GE Y
Sbjct: 915 SMTASAPAIASPPPPKVGETY 935
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 28 FPTWQH-VVDSGLMLESERKVFEKMDGKSPMSKYWMPLVWATNIINRARKEGLITSD 83
F W H +++ L + S+ V K++ MSKY + ++IINR ++ + S+
Sbjct: 313 FQRWHHQMMEDKLSMPSKNFVQRKLNDLRDMSKYVLSEKEVSDIINRKKELSRVPSN 369
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 433 SGSVNNTLHAGQPGTTALAQAVLAPGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPST--- 489
S S ++TL + T+++ + + L+++ + T S ++I+SS+ S+
Sbjct: 223 SSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
Query: 490 PRAERGPADGSGGSPQSPRATITELPPSDRESN 522
P + S S SP +T + + S S+
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS 315
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 425 LSPIQELDSGSVNNTLHAGQPGTTALAQAVLAPG-GLTPMLTTAPVNLTPMGVSQLTTIV 483
L+ + + S ++T TT+ + + AP + +L T+ V+ TP+ + TT
Sbjct: 489 LTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTT-A 547
Query: 484 SSAPSTP 490
+SA STP
Sbjct: 548 TSASSTP 554
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.5 bits (58), Expect = 5.0
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 450 LAQAVLAPGG-LTPMLTTAPVNLTPMGVSQLTTIVSSAPSTPRAERG-PADGSGGSPQSP 507
++Q +LA +T +L T+P+ TP L SS+ TP + P+ S S +
Sbjct: 584 ISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPSSASLSSSKDA 643
Query: 508 RATITELPPSDRESNHSGTPPDF 530
++ E P RE + T DF
Sbjct: 644 NRSVPESP--RREKKNRVTLDDF 664
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 6.7
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 3/114 (2%)
Query: 417 VPVLGALVLSPIQELDSGSVNNT---LHAGQPGTTALAQAVLAPGGLTPMLTTAPVNLTP 473
VP ++P+Q G V N A P P P + + P
Sbjct: 1447 VPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPP 1506
Query: 474 MGVSQLTTIVSSAPSTPRAERGPADGSGGSPQSPRATITELPPSDRESNHSGTP 527
V+ T S+ P + + + +PQ P A P+D H +P
Sbjct: 1507 SSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSMPHRSSP 1560
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 446 GTTALAQAVLAPGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPS 488
G+T A + GGLT + NL +G +LTTI + P+
Sbjct: 248 GSTTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTIGINNPA 290
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,977
Number of Sequences: 5004
Number of extensions: 109465
Number of successful extensions: 351
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 32
length of query: 543
length of database: 2,362,478
effective HSP length: 76
effective length of query: 467
effective length of database: 1,982,174
effective search space: 925675258
effective search space used: 925675258
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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