GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000628-TA|BGIBMGA000628-PA|IPR000615|Bestrophin
         (543 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   1.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   2.1  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    24   2.8  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 63  PLVWATNIINRARKEGLITSDHIVQTLLVELSDIRRRLGALIGYDTVCVPLVYTQVVTLS 122
           P++  T  I++  KE LI++D+I+      + +  ++  + I  D    PL     +T+ 
Sbjct: 4   PMIDITMEISKNHKEQLISNDYILDNYTSPIVEFLQQEDSSIRRD----PLYIVLPITVI 59

Query: 123 LYTYFVAALMG 133
               FV  L+G
Sbjct: 60  YAVIFVTGLVG 70


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 469 VNLTPMGVSQLTTIVSSAPSTPRAERGPADGSGG-SPQSPRAT 510
           V+  P GV      +SS P  PR+  G  D S G SP S  ++
Sbjct: 42  VDPLPFGVENT---ISSVPQPPRSLEGSYDSSSGDSPVSSHSS 81


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 487 PSTPRAERGPADGSGGSPQSPR 508
           P T R +R    G+GG+P+  R
Sbjct: 1   PRTRRVKRSDGRGNGGTPEEKR 22


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,946
Number of Sequences: 429
Number of extensions: 6833
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 3
length of query: 543
length of database: 140,377
effective HSP length: 61
effective length of query: 482
effective length of database: 114,208
effective search space: 55048256
effective search space used: 55048256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)