Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000628-TA|BGIBMGA000628-PA|IPR000615|Bestrophin
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 37 0.030
At3g18810.1 68416.m02389 protein kinase family protein contains ... 33 0.64
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 33 0.64
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 32 0.84
At3g24550.1 68416.m03083 protein kinase family protein contains ... 32 1.1
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 31 1.5
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 31 2.6
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 3.4
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 30 3.4
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 30 4.5
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 30 4.5
At3g49150.1 68416.m05372 F-box family protein contains F-box dom... 30 4.5
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 30 4.5
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family... 29 5.9
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 29 7.8
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 29 7.8
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 29 7.8
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d... 29 7.8
At2g16440.1 68415.m01883 DNA replication licensing factor, putat... 29 7.8
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 37.1 bits (82), Expect = 0.030
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 462 PMLTTAPVNLTPMGVSQLTTIVSSAPSTPRAERGPADGSGGSPQSPRATITELPPSDRES 521
P+L AP TP + SS PSTP P S SP SP + LPPS
Sbjct: 117 PVLAAAPSPSTPSSPPSTPSTPSSPPSTPSTPSSPP--SPPSPPSPSLPPSSLPPSASPP 174
Query: 522 NHSGTP 527
+GTP
Sbjct: 175 T-NGTP 179
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 32.7 bits (71), Expect = 0.64
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 484 SSAPSTPRAERGPADGSGGSPQSPRATITELPPSDRESNHS 524
SS+PS P A P D S GSPQ P ++ ++ PPS + +N++
Sbjct: 35 SSSPSPP-APPPPDDSSNGSPQPP-SSDSQSPPSPQGNNNN 73
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 32.7 bits (71), Expect = 0.64
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 461 TPMLTTAPVNLTPMGVSQLTTIVSS--APSTPRAERGPADGSGGSPQSPRATITELPPSD 518
T TT+PV+ P S L + ++S AP T +R P+ G G S A ++ +
Sbjct: 2002 TSAATTSPVSTAPTTSSTLASAITSSGAPETEDPKRAPSPGGGSSTIVTLADRAQMKRRE 2061
Query: 519 RESN 522
R +N
Sbjct: 2062 RIAN 2065
>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
musculus
Length = 555
Score = 32.3 bits (70), Expect = 0.84
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 460 LTPMLTTAP--VNLTPMGVSQLTTIVSSAPSTPRAERGPADGSGGSPQSPRATITELP-- 515
LTP L P L + ++TT++ +A S R + SGG Q+ RA +
Sbjct: 319 LTPFLPVLPHVCRLMNQEILRVTTLLENALSQSRFDHPSPLASGGIFQNSRADMNGWASQ 378
Query: 516 -PSDRESNHSGTPPDFARKPGSKRG 539
PS+R S S P++ PGS G
Sbjct: 379 FPSER-SVSSSPAPNWLNSPGSSSG 402
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 31.9 bits (69), Expect = 1.1
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 457 PGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPSTPRAERGPADGSGGS-----PQ-SPRAT 510
P +P TT P + P S T S PS+P P GS PQ SP A
Sbjct: 29 PAASSPPPTTTPSSPPP---SPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSPSAP 85
Query: 511 ITELPPSDRESNHSGTPP 528
IT PPS ++ +PP
Sbjct: 86 ITPSPPSPTTPSNPRSPP 103
Score = 30.7 bits (66), Expect = 2.6
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 457 PGGLTPMLTTAPVNLTPMGVSQLTTIVSSAP-STPRAERGPAD-GSGGSPQSPRATITEL 514
PG LTP L P P+ S + S P S P +GP + SG +P++P T
Sbjct: 70 PGSLTPPLPQ-PSPSAPITPSPPSPTTPSNPRSPPSPNQGPPNTPSGSTPRTPSNT-KPS 127
Query: 515 PPSD 518
PPSD
Sbjct: 128 PPSD 131
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 31.5 bits (68), Expect = 1.5
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 447 TTALAQAVLAPGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPSTPR--AERGPADGSGGSP 504
T+ALAQA TP T P TP V+ + AP+TP A PA
Sbjct: 17 TSALAQAPAPTPTATPPPATPPPVATPPPVATPPPAATPAPATPPPAATPAPATTPPSVA 76
Query: 505 QSPRATITELPPS 517
SP T PP+
Sbjct: 77 PSPADVPTASPPA 89
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 474 MGVSQLTTIVSSAPSTPRAERGPADGSGGSP------QSPRATITELPPSDRESNH 523
+ V + SS+PS+ A S G+P SP++ E+PP+D E +H
Sbjct: 141 LSVDASRELTSSSPSSSSASASRGHSSPGTPFNIDPITSPKSAEPEVPPTDSEKSH 196
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 30.3 bits (65), Expect = 3.4
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 445 PGTTALAQAVLAPGGLTPMLTTAPV-NLTPMGVSQLTTIVSSAPSTPRAERGPADGSGGS 503
PG+ + PGG P T P +P T S PS+P GGS
Sbjct: 465 PGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSP-----TTPSPGGS 519
Query: 504 PQSPRATITELPPSDRESNHSGTPPDFARKPGS 536
P SP +I+ PP S PP PGS
Sbjct: 520 PPSP--SISPSPPITVPS-----PPSTPTSPGS 545
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 30.3 bits (65), Expect = 3.4
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 445 PGTTALAQAVLAPGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPSTPRAERGPADGSGGSP 504
P +T+ L PG P + TP+ Q TT ++AP P GPA+ + P
Sbjct: 333 PFSTSTQPVSLPPGQYMPGNAALSAS-TPLTPGQFTT--ANAPPAP---PGPANQTSPPP 386
Query: 505 QSPRATITELPPSDRESNHSGTPPDFARKPGSK 537
P + PP + + PP PG K
Sbjct: 387 PPPPSAAAPPPPPPPKKGPAAPPP--PPPPGKK 417
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 29.9 bits (64), Expect = 4.5
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 372 PITLRNRPRIPTPDVTKEVMDRENRIAMGMQNMGVIMAHQGYQNEVPVL---GALVLSPI 428
PI L+N TP TK +E +++ GVI++ +N ++ A L+ +
Sbjct: 533 PIKLKNWATTGTPKDTKIARHKEKSSLDTVRSPGVILSSDQTENTQEIMETPQAAALAGL 592
Query: 429 QELDSGSVNNTLHAGQPGTTALAQAVLAPGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPS 488
+ S ++ G TT+ TP+ + TP+ S+ T I AP
Sbjct: 593 KVTAGNSNVVSVEMGASSTTSGTAHQTENAAETPVKPSVIAPETPVRTSEQTVI---APE 649
Query: 489 TP 490
TP
Sbjct: 650 TP 651
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 29.9 bits (64), Expect = 4.5
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 372 PITLRNRPRIPTPDVTKEVMDRENRIAMGMQNMGVIMAHQGYQNEVPVL---GALVLSPI 428
PI L+N TP TK +E +++ GVI++ +N ++ A L+ +
Sbjct: 533 PIKLKNWATTGTPKDTKIARHKEKSSLDTVRSPGVILSSDQTENTQEIMETPQAAALAGL 592
Query: 429 QELDSGSVNNTLHAGQPGTTALAQAVLAPGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPS 488
+ S ++ G TT+ TP+ + TP+ S+ T I AP
Sbjct: 593 KVTAGNSNVVSVEMGASSTTSGTAHQTENAAETPVKPSVIAPETPVRTSEQTVI---APE 649
Query: 489 TP 490
TP
Sbjct: 650 TP 651
>At3g49150.1 68416.m05372 F-box family protein contains F-box domain
Pfam:PF00646
Length = 590
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 242 CSADHYK-VKAEDAVYANVQAPRKSHDETYADYE 274
C AD YK + + VYA++ SH T+A YE
Sbjct: 254 CVADKYKNMNFDSLVYASICLQMTSHQRTHASYE 287
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 29.9 bits (64), Expect = 4.5
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 457 PGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPSTPRAERGP--ADGSGGSPQSPRATITEL 514
P P L+ P +T ++ +S P+ P + P D S +P +T
Sbjct: 70 PSSSYPGLSPPPGPITLPNPPDSSSNPNSNPNPPESSSNPNPPDSSSNPNSNPNPPVTV- 128
Query: 515 PPSDRESNHSGTPPDFARKPGS 536
P+ ES+ + PPD + P S
Sbjct: 129 -PNPPESSSNPNPPDSSSNPNS 149
>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 217
Score = 29.5 bits (63), Expect = 5.9
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 457 PGGLTPMLTTAPV--NLTPMGVSQLTTIVSSAPSTPRAERGPADGSGGSPQSPRATITEL 514
PG P L P L P+ + S +PS+ + + SP +P +
Sbjct: 29 PGDDDPALLQPPPPNKLPPLKLKSTPPSNSPSPSSSSSFFSESRSRPVSPFAPPPSFKLK 88
Query: 515 PPSDRESNHSGTPPDFARKPGSKRG 539
PSD +SN S +P + R + G
Sbjct: 89 SPSDSDSNCSASPTPYFRSSSPRAG 113
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 29.1 bits (62), Expect = 7.8
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 61 WMPLVWATNIINRARKEGLITSDHIVQTLLVELSDIRRRLGALIGYDTVCVPLVYTQVVT 120
W +V + ++ + K+ ++ ++H+++ LL + + + RR+ + IG D V + +
Sbjct: 87 WQSIVSSPDVA-KENKQQIVETEHLMKALLEQKNGLARRIFSKIGVDNTKVLEATEKFIQ 145
Query: 121 LSLYTYFVAA--LMGRQL 136
Y AA ++GR L
Sbjct: 146 RQPKVYGDAAGSMLGRDL 163
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 253 DAVYANVQAPRKSHDETYADYESVDTPLVERRKNWFQRQISRMGSVRSA 301
D Y+N+ R+ DET ++Y T L + R Q+ IS + ++ +A
Sbjct: 294 DKAYSNIHDLRRQRDETNSEYYQNRTVLNKARDLAAQKNISELEALANA 342
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 29.1 bits (62), Expect = 7.8
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 442 AGQPGTTALAQAVLAPGGLTPMLTTAPVNLTPMGVSQLTTIVSSAPSTPRAERGPADGSG 501
A QP T + P LT + T N +P +++VSS PS+P A + P+
Sbjct: 10 ASQPPETPPQPSDSKPSTLTQIQPTPSTNPSP------SSVVSSIPSSP-APQSPS--LN 60
Query: 502 GSPQSPRATITELPPSDRESNHSGTP 527
+P P+ T P+ ++ H P
Sbjct: 61 PNPNPPQYTRPVTSPATQQQQHLSQP 86
>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
domain, PF00257: Dehydrin
Length = 185
Score = 29.1 bits (62), Expect = 7.8
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 462 PMLTTAPVNLTPMGVSQLTTIVSSAPSTPRAERGPADGSGGSPQSPRATITELP----PS 517
PM T V+ TP T+ ++ P++ E PA G+ + AT T + +
Sbjct: 32 PMYLTGVVSSTPQHKESTTSDIAEHPTSTVGETHPAAAPAGAGAATAATATGVSAGTGAT 91
Query: 518 DRESNHSGTPPDFARKPGS 536
H G+ + R+ GS
Sbjct: 92 TTGQQHHGSLEEHLRRSGS 110
>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
similar to SP|P49717 DNA replication licensing factor
MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
protein {Schizosaccharomyces pombe}; contains Pfam
profile PF00493: MCM2/3/5 family
Length = 847
Score = 29.1 bits (62), Expect = 7.8
Identities = 36/117 (30%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 418 PVLGALVLSPIQELDSGSVNNTLHAGQPGTTALAQAVLAPGGLTPMLTTAPVNLTPMGVS 477
P G V SPI+ S LH + G ++ P P A N TP
Sbjct: 15 PSPGENVSSPIENTYSSPA--ALHRRRRGRSSTPTQFATPP--PPPSRLASSNSTPP--- 67
Query: 478 QLTTIVSSAPSTPRAERGPADGSGGS--PQSPRATITELPPSD--RESNHSGTPPDF 530
T+ S+A S R G G GG P +P +T LP SD E T P F
Sbjct: 68 --TSRPSAARSKGRNGHGGGGGGGGGGDPGTPMSTDEPLPSSDDGEEDGGDDTTPTF 122
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,313,361
Number of Sequences: 28952
Number of extensions: 586464
Number of successful extensions: 1594
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1571
Number of HSP's gapped (non-prelim): 37
length of query: 543
length of database: 12,070,560
effective HSP length: 85
effective length of query: 458
effective length of database: 9,609,640
effective search space: 4401215120
effective search space used: 4401215120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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