GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000627-TA|BGIBMGA000627-PA|IPR000449|Ubiquitin-
associated/Translation elongation factor EF1B, N-terminal,
IPR000608|Ubiquitin-conjugating enzyme, E2, IPR009060|UBA-like
         (199 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.7  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 94  DILKDQWAAALTLRTVLLSLQALLSAGEPNDPQDAVVAKQFRENPRLFTMTAR 146
           D++KD +     L+     L+ LLS G   D       K  +    L T T R
Sbjct: 80  DVIKDNYRKVTDLKKRFPKLKVLLSVGGNADVSGQDEEKNIKYRNLLETTTRR 132


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 94  DILKDQWAAALTLRTVLLSLQALLSAGEPND 124
           DI++  + +   L+ V   L+ L+S GE  D
Sbjct: 229 DIIQGGYISVTGLKRVNPKLKVLISVGEGRD 259


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,975
Number of Sequences: 317
Number of extensions: 1864
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 199
length of database: 114,650
effective HSP length: 54
effective length of query: 145
effective length of database: 97,532
effective search space: 14142140
effective search space used: 14142140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)