Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000627-TA|BGIBMGA000627-PA|IPR000449|Ubiquitin-
associated/Translation elongation factor EF1B, N-terminal,
IPR000608|Ubiquitin-conjugating enzyme, E2, IPR009060|UBA-like
(199 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 164 9e-42
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 131 6e-32
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 124 1e-29
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 102 3e-23
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 102 4e-23
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 96 3e-21
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 95 8e-21
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 88 7e-19
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 83 2e-17
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 80 2e-16
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 72 7e-14
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 67 2e-12
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 53 3e-08
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 47 2e-06
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 31 0.12
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 29 0.47
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 27 1.4
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 27 1.4
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 27 1.9
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 27 1.9
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 26 4.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 7.6
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 164 bits (398), Expect = 9e-42
Identities = 74/156 (47%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 1 MANIAAKRIKREFKEIMKSEEVIGGSIKLGLVNENWTELKGEIAGPVDTPYEGGTFLLEI 60
M++ ++RI +E ++ + ++ I++ +N++ + LKG GP TPYEGG F+++I
Sbjct: 1 MSDNRSRRIAKELADVQQDKQA---GIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDI 57
Query: 61 KVPETYPFNPPKIRFLTKIWHPNVSSVTGAICLDILKDQWAAALTLRTVLLSLQALLSAG 120
++P YPF PPK+ F TKI+HPNVSS TGAICLDILKDQW+ T+++ L+SLQ+LL
Sbjct: 58 EIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTP 117
Query: 121 EPNDPQDAVVAKQFRENPRLFTMTARHWTNVYAGGP 156
EP++PQDA VA+ + +N + F TAR WT+ YA P
Sbjct: 118 EPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAP 153
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 131 bits (317), Expect = 6e-32
Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 4/150 (2%)
Query: 4 IAAKRIKREFKEIMKSEEVIGGSIKLGLVNENWTELKGEIAGPVDTPYEGGTFLLEIKVP 63
+A KRI RE ++ K S G V ++ + I GP D+PY GG F L I P
Sbjct: 1 MALKRINRELADLGKDPP---SSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFP 57
Query: 64 ETYPFNPPKIRFLTKIWHPNVSSVTGAICLDILKDQWAAALTLRTVLLSLQALLSAGEPN 123
YPF PPK+ F T+I+HPN++S G+ICLDIL+DQW+ ALT+ VLLS+ +LL+ P+
Sbjct: 58 TDYPFKPPKVNFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVLLSICSLLTDPNPD 116
Query: 124 DPQDAVVAKQFRENPRLFTMTARHWTNVYA 153
DP +A ++ + + ++AR WT YA
Sbjct: 117 DPLVPEIAHVYKTDRSRYELSAREWTRKYA 146
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 124 bits (298), Expect = 1e-29
Identities = 66/144 (45%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 14 KEIMKSEEVIGGSIKLGLV----NENWTELKGEIAGPVDTPYEGGTFLLEIKVPETYPFN 69
K I+K E + G+V +N K + GP + YEGG F LE+ +P+ YP
Sbjct: 5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMM 64
Query: 70 PPKIRFLTKIWHPNVSSVTGAICLDILKDQWAAALTLRTVLLSLQALLSAGEPNDPQDAV 129
PP +RFLTKI+HPNV + G ICL LK W+ AL +RTVLLS+QAL+ A P+DP D
Sbjct: 65 PPNVRFLTKIYHPNVDKL-GRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDND 123
Query: 130 VAKQFRENPRLFTMTARHWTNVYA 153
VAK ++EN AR WT YA
Sbjct: 124 VAKIWKENEPQAIANAREWTKKYA 147
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 102 bits (245), Expect = 3e-23
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 3 NIAAKRIKREFKEIMKSEEVIGGSIKLGLVNE-NWTELKGEIAGPVDTPYEGGTFLLEIK 61
N + KR+ +E+ + I G + L V + + K I GP +TPYEGG ++L+I
Sbjct: 2 NSSIKRLHKEYASFQAGD--ISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIH 59
Query: 62 VPETYPFNPPKIRFLTKIWHPNVSSVTGAICLDILKDQWAAALTLRTVLLSLQALLSAGE 121
V E YP +PP + F TKI HPN+S G +C+DILK W+ A +L++ L++ +LLS +
Sbjct: 60 VHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYD 119
Query: 122 PNDPQDAVVAKQFRENPR-LFTMTARHWTNVYAGG 155
+ P + AK R + + R T +YA G
Sbjct: 120 ASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 102 bits (244), Expect = 4e-23
Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
Query: 7 KRIKREFKEIMKSEEVIGGSIKLGLVNENWTELKGEIAGPVDTPYEGGTFLLEIKVPETY 66
KR++ E +M S G + N G I GP DT YEG F + + P Y
Sbjct: 31 KRLRSELMSLMMSNTP--GISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANY 88
Query: 67 PFNPPKIRFLTKIWHPNVSSVTGAICLDILKDQWAAALTLRTVLLSLQALLSAGEPND-- 124
P++PP I F + +WHPNV ++G ICLDILKD+W+A ++T+LLSLQ+LL GEPN+
Sbjct: 89 PYSPPTIIFTSPMWHPNV-DMSGNICLDILKDKWSAVYNVQTILLSLQSLL--GEPNNAS 145
Query: 125 PQDAVVAKQFRENP 138
P +A A+ + ++P
Sbjct: 146 PLNAQAAELWSKDP 159
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 96.3 bits (229), Expect = 3e-21
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 1 MANIAAKRIKREFKEIMKSEEVIGGSIKLGLVNENWTELKGEIAGPVDTPYEGGTFLLEI 60
M+ A +R+ R+FK M+ + G + V++N I GP DTP+E GTF L +
Sbjct: 1 MSTTARRRLMRDFKR-MQQDPPAG--VSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVL 57
Query: 61 KVPETYPFNPPKIRFLTKIWHPNVSSVTGAICLDILKDQWAAALTLRTVLLSLQALLSAG 120
E YP PP ++F++ ++HPNV + G +CLDIL+++W+ + +L S+Q+LL+
Sbjct: 58 SFDEQYPNKPPLVKFVSTMFHPNVYA-NGELCLDILQNRWSPTYDVAAILTSIQSLLNDP 116
Query: 121 EPNDPQDAVVAKQFRENPRLFTMTAR 146
P +A A+ REN + + R
Sbjct: 117 NNASPANAEAAQLHRENKKEYVRRVR 142
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 94.7 bits (225), Expect = 8e-21
Identities = 56/154 (36%), Positives = 80/154 (51%), Gaps = 2/154 (1%)
Query: 1 MANIAAKRIKREFKEIMKSEEVIGGSIKLGLVNENWTELKGEIAGPVDTPYEGGTFLLEI 60
MA+ + +R KE E I++ LV++N GP D+ Y GG F +
Sbjct: 1 MASASPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSL 60
Query: 61 KVPETYPFNPPKIRFLTKIWHPNVSSVTGAICLDILKDQ-WAAALTLRTVLLSLQALLSA 119
K P YPF PP I F T+I+HPN S G +CL ILK Q + ++ LR+VL + LL
Sbjct: 61 KFPLDYPFQPPTIEFTTRIYHPNFDS-EGNVCLAILKQQVFKPSIKLRSVLEQILQLLRE 119
Query: 120 GEPNDPQDAVVAKQFRENPRLFTMTARHWTNVYA 153
P+DP A +A+Q+R + F AR + +A
Sbjct: 120 PNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 88.2 bits (209), Expect = 7e-19
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 18/152 (11%)
Query: 9 IKREFKEIMKSEEVIGGSIKLGLVNENWT-ELKGEIAGPVDTPYEGGTFLLEIKVPETYP 67
++++ KEI K+ +GLV++ E + I GP DT YEGG F + P+ YP
Sbjct: 10 LRKQLKEIQKNPPQ---GFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYP 66
Query: 68 FNPPKIRFLTKIWHPNVSSVTGAICLDILK-------------DQWAAALTLRTVLLSLQ 114
PPK++F T+IWHPNV G +C+ IL ++W + T+L+S+
Sbjct: 67 LMPPKMKFTTEIWHPNVHP-NGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVI 125
Query: 115 ALLSAGEPNDPQDAVVAKQFRENPRLFTMTAR 146
++LS+ P + AK+FRENP+ F R
Sbjct: 126 SMLSSPNDESPANIDAAKEFRENPQEFKKRVR 157
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 83.4 bits (197), Expect = 2e-17
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 31 LVNENWTELKGEIAGPVDTPYEGGTFLLEIKVPETYPFNPPKIRFLTKIWHPNVSSVTGA 90
LVN+N E GP +TPY GG + + +++P YP+ P I F+ +I+HPN+ ++G+
Sbjct: 24 LVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGS 83
Query: 91 ICLDILKDQWAAALTLRTVL-LSLQALLSAGEPNDPQDAVVAKQFRENPRLFTMTARHWT 149
+CLD++ W+ + + + L LL +DP + A P + R +
Sbjct: 84 VCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYI 143
Query: 150 NVYA 153
YA
Sbjct: 144 ARYA 147
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 80.2 bits (189), Expect = 2e-16
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 46 PVDTPYEGGTFLLEIKVPETYPFNPPKIRFLTKIWHPNVSSVTGAICLDILKDQWAAALT 105
P + Y+GG F I++ + YP +PPK++ L KI+HPN+ + G +CL+IL+ W L
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNI-DIEGNVCLNILRQDWNPVLN 118
Query: 106 LRTVLLSLQALLSAGEPNDPQDAVVAKQFRENPRLFTMTAR 146
L ++L+ LQ L + DP + A ++P+ F R
Sbjct: 119 LNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 71.7 bits (168), Expect = 7e-14
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 30 GLVNENWTELKGEIAGPVDTPYEGGTFLLEIKVPETYPFNPPKIRFLTKIWHPNVSSVTG 89
GL NW K I G T +EGG + L + PE YP PPK RF ++HPNV +G
Sbjct: 35 GLDLMNW---KVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SG 90
Query: 90 AICLDILKDQ--WAAALTLRTVLLSLQALLSAGEPN 123
+CL IL ++ W A+T++ +LL +Q LL +PN
Sbjct: 91 TVCLSILNEEEGWKPAITIKQILLGIQDLLD--DPN 124
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 66.9 bits (156), Expect = 2e-12
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 28/162 (17%)
Query: 4 IAAKRIKREFKEIMKSEEVIGGSIKLGLVNEN----WTELKGEIAGPVDTPYEGGTFLLE 59
+A +R+ +E+KE+ ++ I G NE+ W L I GP TP+EGG +
Sbjct: 5 MALRRLMKEYKELTENGP---DGITAGPSNEDDFFTWDCL---IQGPDGTPFEGGLYPAT 58
Query: 60 IKVPETYPFNPPKIRFLTKIWHPNVSSVTGAICLDIL-------------KDQWAAALTL 106
+K P YP PP ++F + +HPNV G +C+ IL ++W+ ++
Sbjct: 59 LKFPSDYPLGPPTLKFECEFFHPNVYK-DGTVCISILHAPGDDPNMYESSSERWSPVQSV 117
Query: 107 RTVLLSLQALLSAGEPNDPQDAVV--AKQFRENPRLFTMTAR 146
+LLS+ ++L+ EPND A + K +RE+ + R
Sbjct: 118 EKILLSVMSMLA--EPNDESGANIDACKMWREDREEYCRVVR 157
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 53.2 bits (122), Expect = 3e-08
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 5 AAKRIKREFKEIMKSEEVIGGSIKLGLVNENWTELKGEIAGPVDTPYEGGTFLLEIKVPE 64
A KR+ +E+ + K+ + + EN E I GP DTPYEGG + + P
Sbjct: 6 AYKRLMKEYLALQKNPVEL---VDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 65 TYPFNPPKIRFLTKIWHPNVSSVTGAICLDILKDQWAAALTLRTVLLSLQALLSAGE 121
YPF PP IR +T ++ D W + + T+L+ L + +++ E
Sbjct: 63 DYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDE 119
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 47.2 bits (107), Expect = 2e-06
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 8 RIKREFK---EIMKSEEVIG-GSIKLGLVNEN---WTELKGEIAGPVDTPYEGGTFLLEI 60
++ R FK E+ K E+ +G S GL N + ++ I GP + +E + L+I
Sbjct: 3 KVPRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKI 62
Query: 61 KVPETYPFNPPKIRFLTKIWHPNVSSVTGAI---CLDILKDQWAAALTLRTVLLSLQ 114
YP PP + F+++I P V TG + +D L+ W ++ TVLL L+
Sbjct: 63 HCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLR-HWKREYSMETVLLDLK 118
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 57 LLEIKVPETYPFNPPKIRFLTKIWHP 82
++E +PE YPFN P FL W P
Sbjct: 73 VMEFFLPEAYPFNSPPTFFLKSSWLP 98
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 29.1 bits (62), Expect = 0.47
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 159 VHECNSKVQRMLDMGIDEHQARVALSSYDWDLERATEQLF 198
+ + ++K++ + +MG+ E A+ +L +D+E A E +F
Sbjct: 1 MEDLDTKIKTLKNMGVSESDAKDSLERCGYDVESAAEFIF 40
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 6 AKRIKREFKEIMKSEEVIGGSIKLGLVNENWTELKGEIAGPV 47
AK +F K +GG ++ G+V ++ L G GPV
Sbjct: 291 AKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPV 332
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 6 AKRIKREFKEIMKSEEVIGGSIKLGLVNENWTELKGEIAGPV 47
AK +F K +GG ++ G+V ++ L G GPV
Sbjct: 291 AKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPV 332
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 163 NSKVQRMLDMGIDEHQARVALSSYDWDLERATEQL 197
NSK+ +++ MG D +A AL + + DL+ A L
Sbjct: 297 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 331
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 53 GGTFLLEIKVPETYPFNPPKIRFLT 77
G TF L I + YP NP K RFLT
Sbjct: 268 GITFFLSIFLFFYYPDNPSKARFLT 292
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 4.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 123 NDPQDAVVAKQFRENPRLFTMTARHW---TNVYAGGPNIVH--ECNSKVQRMLDMGIDEH 177
++P + FRENP +F AR TN Y+ + E +K+ + ID
Sbjct: 192 SEPSEMFDIHTFRENPEIFYTFARDLLPETNHYSPSHAFIRLLEKKNKLSTLFTQNIDNL 251
Query: 178 QARVALS 184
+ + LS
Sbjct: 252 EKKTGLS 258
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 7.6
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 16/110 (14%)
Query: 33 NENWTELKGEIAGPVDTPYEGGTFLLEIKVPETYPFNPPKIRFLTKIWHPNVSS---VTG 89
+E W ++ AG D P ++PE + P F+ ++W+ +S+ +T
Sbjct: 269 DEKWCFIRSNFAG-FDDP--------SFQIPELAAVHRPVSWFVIQLWNKTISNLQLITL 319
Query: 90 AICLDILKDQWAAALTLRTVLLSLQALLSAGEPNDPQDAVVAKQFRENPR 139
+ L D+W + L +L LL+ AVV Q E PR
Sbjct: 320 SSLLSTQSDRWISLFLELQGLRALHNLLTYFN----SSAVVQPQQAEVPR 365
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 920,850
Number of Sequences: 5004
Number of extensions: 37500
Number of successful extensions: 115
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 24
length of query: 199
length of database: 2,362,478
effective HSP length: 69
effective length of query: 130
effective length of database: 2,017,202
effective search space: 262236260
effective search space used: 262236260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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