GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000627-TA|BGIBMGA000627-PA|IPR000449|Ubiquitin-
associated/Translation elongation factor EF1B, N-terminal,
IPR000608|Ubiquitin-conjugating enzyme, E2, IPR009060|UBA-like
         (199 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 145 ARHWTN-VYAGGPNIVHECNSKVQRMLDMGIDEHQARVALSSYD 187
           A+H  N +YA    IVHE   ++  ++   I E +  V LS+ D
Sbjct: 333 AQHKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVLLSNND 376



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 64  ETYPFNP 70
           ETYPFNP
Sbjct: 175 ETYPFNP 181


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 145 ARHWTN-VYAGGPNIVHECNSKVQRMLDMGIDEHQARVALSSYD 187
           A+H  N +YA    IVHE   ++  ++   I E +  V LS+ D
Sbjct: 371 AQHKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVLLSNND 414



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 64  ETYPFNP 70
           ETYPFNP
Sbjct: 213 ETYPFNP 219


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 65  TYPFNPPKIRFLTKIWHP 82
           TY F+ P++ +  K +HP
Sbjct: 137 TYNFDYPQVPYTVKNFHP 154


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,502
Number of Sequences: 429
Number of extensions: 2413
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 199
length of database: 140,377
effective HSP length: 55
effective length of query: 144
effective length of database: 116,782
effective search space: 16816608
effective search space used: 16816608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)