Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000626-TA|BGIBMGA000626-PA|IPR002562|3'-5' exonuclease,
IPR002121|HRDC, IPR012588|PMC2NT, IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 282 1e-76
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 34 0.059
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.059
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 33 0.14
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe... 32 0.24
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 32 0.31
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 31 0.42
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 31 0.55
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 31 0.55
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 30 1.3
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 29 2.2
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 2.9
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 29 2.9
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 28 3.9
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 28 5.1
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 28 5.1
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 28 5.1
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 28 5.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 28 5.1
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 27 6.8
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 6.8
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 27 8.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 8.9
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 8.9
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 282 bits (692), Expect = 1e-76
Identities = 161/461 (34%), Positives = 255/461 (55%), Gaps = 23/461 (4%)
Query: 45 EDFTSNIEKLADVNDSLLDRINISIDTVSGENLPSEAFASGLNDNPSHNSSPWNKPVISE 104
ED + +++D D L ++ + SID G L A + + + N P +
Sbjct: 69 EDIDNRWAEVSDTLDILFEKADYSIDKAQGL-LKKPAIETHASTSDVANKKP------KK 121
Query: 105 KKMGSTIFIGAKNIPRPQLTFKDTIDNS-ENLWVPKISDKPNNIKPLALNILYTEKGEAV 163
+K+ + I A ++ +PQL F+ +NS E +W K+++KP+++ PL I + ++
Sbjct: 122 EKLPYKV-IHAAHLTKPQLRFRVQPNNSREFVWSWKLTEKPHSLVPLEKIIAQVKLDPSL 180
Query: 164 --GYEHPYQMELDMYNPPSQFIDXXXXXXXXXXXXXXTKFTYIDIESKLDELVEHLMAVE 221
HPY+ E+ P + T+ ++ ES+L ++++ L +
Sbjct: 181 KNSLPHPYEPEIQNSVYPPWVSEMSNPIDTGSVDE--TEPIWVSTESQLSDMLKELQNSK 238
Query: 222 QIAVDVEHHSYRTYQGITCLIQISTDEGGDFIIDALAVREHIHKLNVVFTDPKKLKVFHG 281
+IAVD+EHH YR+++G CL+QIS E D+I+D L +RE + LNVVFT+P +KVFHG
Sbjct: 239 EIAVDLEHHDYRSFRGFVCLMQISNREK-DWIVDTLELREELEALNVVFTNPNIIKVFHG 297
Query: 282 ADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSLKFLLMKYCGVDTDKTYRLADWRIR 341
A D++WLQRDFG+Y+V LFDTY+A K LG L FLL KYC D DK Y++ADWRIR
Sbjct: 298 ATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIR 357
Query: 342 PLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNA-GQTNMLLSVFEDSRQTCASTYNKEV- 399
PLP ++KYA+ DTHYLLY+W ++N++I K+A + N++ SVF S+Q Y E
Sbjct: 358 PLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQSVFNSSKQISLRKYELEPY 417
Query: 400 -------IHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLL 452
++ S K + + + L+ WRDS AR+ DES Y+LPN +L+
Sbjct: 418 DPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLI 477
Query: 453 SLSENLPRELQGVNACCDPMPPFVKQNVITIHRMILSCREL 493
+++ + P E V + + P + V I +++ +L
Sbjct: 478 AIAASKPVEAADVFSISKQLTPIARMYVEDIVKVVQEAEKL 518
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 34.3 bits (75), Expect = 0.059
Identities = 31/154 (20%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 510 MNAGIEQIHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMMF 569
+ + +E + + DL++E R + +S +EQ+ TK+ + + + E + S+
Sbjct: 1343 LKSELETVKSKSEDLENE---RAQNQSKIEQLEL---KNTKLAAAWRTKYEQVVNKSLEK 1396
Query: 570 PEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAAND 629
+++++ E+EAKVA Q NE + + QS + ++V+ + N
Sbjct: 1397 HNQIRQQLSQKTSELEAKVAECHQLNEQLNKPSATPTATTQS----EPSTVSLE--EFNS 1450
Query: 630 TEPDTKTAQRKRKIVTE--NAEEQNVGRAHKNEH 661
T+ + + QRK + + N ++ + + +N +
Sbjct: 1451 TKEELSSTQRKLSEIMDILNTTKEELEKVRQNSN 1484
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 34.3 bits (75), Expect = 0.059
Identities = 18/103 (17%), Positives = 48/103 (46%)
Query: 507 RNMMNAGIEQIHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPAS 566
+N N +E I E+ + E +KSN++Q T ++ ++ + + + + +
Sbjct: 938 QNPDNVEVEAISIELERTKEKLRMAELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESE 997
Query: 567 MMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKA 609
+ E I + ++ ++ +V + + E +E+ ++L+ A
Sbjct: 998 ISTREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLEDA 1040
Score = 28.7 bits (61), Expect = 2.9
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 532 EEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMMFPEGTIEEIAKDIKEMEAKVAAI 591
E K VEQ N T T++ + +N + E +S+ +E+ KE+ +K A
Sbjct: 1397 ENLKKEVEQAN---TKNTRLAAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNAE- 1452
Query: 592 SQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQ 651
NE +++E+ + L+ + + Q +A++D E TK + K E E++
Sbjct: 1453 ---NEAMQKEI-ESLKDSNHQL---------QESASSDAEQITKEQFEQLKSEKERTEKE 1499
Query: 652 NVGRAHKNEHV 662
++ EH+
Sbjct: 1500 LADSKNELEHL 1510
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 575 EEIAKDIKEMEAKVA---AISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTE 631
E + + + + E+++A ++ Q ++L+ E++ + +K E+ K+
Sbjct: 17 ENLVQPLTQDESRLALFESLVQSDQLLVEKIEKWEKKVSKFTENSKSEKRKLQLELFQEI 76
Query: 632 PDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKE 672
D K + I+ +NA + N+ KN H KK++ KE
Sbjct: 77 IDLKKCIAFKPIIGKNAIDNNISDLKKNLHSNKKLEAVLKE 117
>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 6 DLFKTYPEFNEISNQISQNVAQQSNELIGTEQPAVK 41
DLFKT+ E+ + ++ QN Q N LIG E ++
Sbjct: 60 DLFKTFDEYVNEARRLKQNYGDQINILIGAETEYIR 95
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 31.9 bits (69), Expect = 0.31
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Query: 125 FKDTIDNSENLWVPKISDKPNNIKPLALNILYTEKGEAVGYEHPYQMELDMYNPPSQFID 184
+++++ + W+P++ D + K + + L E +A+ + + D+ + P I
Sbjct: 91 YEESVSKFKESWLPQLKDLIESHKTICESTLAYESDQAMASSNTLKRIKDLKSKPKNIIQ 150
Query: 185 XXXXXXXXXXXXXX-TKFTYIDIESKLDELVEHLMAVEQIAVDVEH 229
+K DIES L HL EQ+ + +H
Sbjct: 151 LERLHMLSNGEHRLLSKDETDDIESAYLNLRSHLQVQEQVYAEKDH 196
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 574 IEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAA----AND 629
+E + + + E+E K + G +EE V+ K+ ++ S + D +S+A A AND
Sbjct: 308 LENLREMLSELEQKTLDLKHGAPSLEEAVMSKMHES-SLLSKDSSSLAQAVAEAVKNAND 366
Query: 630 TEPDTKTAQRKRKIVTENAEE 650
K + K+++ + + +E
Sbjct: 367 LGGLVKRKRTKQEVTSSSQKE 387
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 31.1 bits (67), Expect = 0.55
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 574 IEEIAKDIKEMEAKVAAI------SQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAA 627
+E++ K+ +EA++ ++ SQ L + E L+ +K + ++K + AA
Sbjct: 436 LEKLIKNNSCLEAELPSMYAAFDQSQSRLLKKYEELETKEKKALEMHYEKARATQKYFAA 495
Query: 628 NDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKEVTAGYQYQNATYDK 686
D ++K + EN E +G+ + EH K + + K Y+ Y K
Sbjct: 496 MKAR-DILMTEKKTLKLAENKEHDYIGKLQEREHALTKYESSLKAELEVYKQIKEIYGK 553
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 573 TIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKA 609
TIE+I + I +EA+V + + ++L+E LQ+L+ A
Sbjct: 71 TIEDIIERITRLEARVRQLVESSQLLEARYLQQLEFA 107
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 564 PASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKA-QSHIEHDKTSVA- 621
PA+ E T + + I Q + IEE+V Q Q+ IE ++
Sbjct: 403 PATGPAEESTSTQNVEQASTQNDNGTPIGQIADAIEEDVKGTAQSVEQAFIEETDIALPD 462
Query: 622 ---PQAAA--ANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKK 665
P A A+D +P T + + E+ + G+ H H KK
Sbjct: 463 IALPDVATPTADDQDPSTAATNEESVVSNEDRTSKKAGKKHHRHHKKKK 511
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 76 NLPSEAFASGLNDNPSHNSSPWNKPVISEKKMGSTIFIGAKNIPRPQLTFKDTIDNS 132
+L + ++ ND+ S+N +P N +S+K+ S ++P L + T +NS
Sbjct: 76 DLQMSSQSANKNDDNSNNQNPSNNKEMSDKESDSATTTQTFSVPEELLRARTTANNS 132
>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 190
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 13 EFNEISNQISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDSLLDRINISIDTV 72
+F +N N+ S E P +K C FTS+I D N + D + + T
Sbjct: 14 DFPTTTNFFLTNILSMSVVFRTVEDPELKSICTTFTSSISAEFDSNTLVCDLVETDLFTE 73
Query: 73 SG 74
G
Sbjct: 74 EG 75
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 547 VTTKITSKFNPEVEAFIPASMMFPEGTIEEIAKDIKEMEA--KVAAISQGNELIEEEVLQ 604
+ T++ + + +P ++F E TIE +AK+I+ M++ ++ + G E E ++
Sbjct: 918 LATRLIFELRKKFAVNVPLGLVFSEPTIEGLAKEIERMKSGEMISVMDIGKEETREPEIE 977
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 635 KTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKEVTAGYQYQNATYDKFYNV 690
K A RK++ EN EE+ + R NE V +K E+ Y+Y +++K Y +
Sbjct: 57 KQAMGSRKLIKENREEREIIRKVDNEEVVEKKLWTTYEL-GPYEY--ISFNKVYEI 109
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 547 VTTKITSKFNPEVEAFIPASMMF-PEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQK 605
+T I FN E+ AS MF + + + K + +EA + G+E++ + +
Sbjct: 195 LTHSIVFLFNDAEESLQDASHMFITQSPLRDTIKCVVNLEA---CGTTGSEILFQATSNE 251
Query: 606 LQKAQSHIEH 615
+ KA SH+ H
Sbjct: 252 MIKAYSHVPH 261
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 574 IEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEP 632
+E +++D + +A A++ GN E + Q+A+SH D T +A + EP
Sbjct: 289 VEAMSEDEQMHKAIAASLGNGNSTTESQGESSSQQAESHGVADDTVHKIDSAECDAEEP 347
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.9 bits (59), Expect = 5.1
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 12 PEFNEISNQISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDSLLDRINISIDT 71
P+ ++ NQ N +N I + P+++ T+N D N + N + T
Sbjct: 276 PQVHDHENQTQLNHHLDNNSSISSHNPSLE------TAN-----DGNQETVSSSNSNYST 324
Query: 72 VSGENLPSEAFASGLNDNPSHNSSPWNKPVISEKKMGSTIFIGAKNIPR 120
+N P A S N N H ++ GS I I +PR
Sbjct: 325 TRVDNDPHVASYSPQNSNFDHQAAATTNDAHQNVVRGSAITIAPTPVPR 373
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 27.9 bits (59), Expect = 5.1
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 568 MFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAA 627
MF + + +E ++ MEA + + EL E+E ++L ++I + +V P
Sbjct: 122 MFSDDSGDEEDLELANMEAMSRKLDEEAELEEKEAEEEL---HTNIHPEAPTVLPPIDGF 178
Query: 628 NDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKK-----IDVAKKEVTAGYQYQNA 682
D++P + Q +I E V KN P + +D ++ A Y Y
Sbjct: 179 TDSQPISTLPQDLSQIQLRIQEIVRVLNDFKNLCEPGRNRSEYVDQLLNDICAYYGYSRF 238
Query: 683 TYDKFYNV 690
+K + +
Sbjct: 239 LAEKLFEL 246
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 514 IEQIHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVE 560
I Q+ ++H+ HEAE ++ ++ E N + T FNPE+E
Sbjct: 269 IFQLEEKLHEASHEAEISIKKLNDAE--NRIKELENNPTLSFNPELE 313
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 381 LSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDSQAR 436
L V+ ++RQ A Y + V H+ Y R++ N+QMA+ ++L++ RD++ R
Sbjct: 345 LDVYAEARQLFAPIYLELVRIIVRHLH-YPRTEDLAINEQMASNEVLFEDRDAEDR 399
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 65 INISIDTVSGENLPSEAFASGLNDNPSHNSSPWNKP 100
+N S+D +S + PS F + + SH SSP+ P
Sbjct: 314 LNPSVDLLSNHSTPSFIFENSPSAEFSHQSSPYLVP 349
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 527 EAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMMFPEGTIEEIAKDIKEMEA 586
E +Y EE+K +++N C +T + E+ A I A + E I+++ K E
Sbjct: 71 EVQYIEEEKKTNQELNDC-RGNQLMTQEEIDELRANIKAGGLRAEEAIKQLTNSSKTFEQ 129
Query: 587 KVAAISQGNELIE-EEVLQKLQKAQSHIE 614
K + + E+ LQ+ Q + +E
Sbjct: 130 KTLFAQEKYVTRKGEKYLQRFQVLRPCVE 158
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 599 EEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHK 658
+EE++ L S E +T + + A DT D K + ++ E +Q K
Sbjct: 377 QEELISSLTTGLSTTEGHETGYSRKLHEARDTLNDFKAEKETNRLKLEGLNKQISLTKPK 436
Query: 659 NEHVPKKIDVAKKEV 673
K+ D +E+
Sbjct: 437 KAEATKRCDQLNREI 451
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 582 KEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKR 641
K++ KV A+ G + + + +A +H E TS + T+ + A K+
Sbjct: 1230 KDVHVKVNAVLAGLQKNDPSAYSNMLEA-THFELSTTSSTSDSNEIEKTQEKKRLALEKQ 1288
Query: 642 KIVTENAEEQNVGRAHKNEHVPKKIDVAKKEVTAGYQYQNATY 684
K + + +Q +N D + EVT + Y
Sbjct: 1289 KKIMQQFRDQQASFLAQNTDFDIGEDQTEDEVTTEEPEEEVKY 1331
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,739
Number of Sequences: 5004
Number of extensions: 143119
Number of successful extensions: 480
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 34
length of query: 709
length of database: 2,362,478
effective HSP length: 78
effective length of query: 631
effective length of database: 1,972,166
effective search space: 1244436746
effective search space used: 1244436746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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