Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000626-TA|BGIBMGA000626-PA|IPR002562|3'-5' exonuclease,
IPR002121|HRDC, IPR012588|PMC2NT, IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 214 2e-55
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 120 3e-27
03_01_0397 + 3086142-3086489,3087097-3087252,3088043-3088201,308... 110 4e-24
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377... 43 0.001
07_03_0232 + 15539586-15539696,15541524-15541727,15542612-155426... 38 0.028
07_03_1794 - 29580767-29584189 36 0.084
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229... 35 0.19
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 33 0.78
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859... 33 1.0
09_04_0559 + 18516732-18516746,18516893-18517330 32 1.4
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 32 1.4
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 32 1.4
02_01_0161 - 1123890-1124210,1124599-1124673,1124841-1124903,112... 32 1.4
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 32 1.8
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289... 32 1.8
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 31 2.4
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 31 2.4
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 31 4.2
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 31 4.2
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175... 30 5.5
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 30 5.5
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 30 5.5
09_02_0378 - 8146138-8147091 30 7.3
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 30 7.3
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 30 7.3
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 9.7
07_01_0166 + 1164903-1165144,1165839-1166074,1166719-1166781,116... 29 9.7
05_07_0001 + 26976510-26977382 29 9.7
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 29 9.7
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 29 9.7
03_01_0146 - 1161005-1161133,1161239-1161283,1161369-1161469,116... 29 9.7
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 9.7
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 214 bits (523), Expect = 2e-55
Identities = 105/262 (40%), Positives = 168/262 (64%), Gaps = 19/262 (7%)
Query: 199 TKFTYIDIESKLDELVEHLMAVEQIAVDVEHHSYRTYQGITCLIQISTDEGGDFIIDALA 258
T FT+++ L+ L L + + AVD+EH+ YR++QG+TCL+QIST DFI+D L
Sbjct: 215 TPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQIST-RTEDFIVDTLK 273
Query: 259 VREHIHK-LNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSL 317
+R+++ L +F DP K KV HGAD D++WLQRDFG+Y+ LFDT A++ L + SL
Sbjct: 274 LRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQMDRNSL 333
Query: 318 KFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNAGQT 377
+ LL +CGV +K +YAR DTHYLLY++ +M+ +++++++ +
Sbjct: 334 EHLLHHFCGVTANK-----------------EYAREDTHYLLYIYDLMRLRLVKESSDEN 376
Query: 378 NMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDSQARQ 437
++LL V++ S++ C Y KE++ S++ ++ + FD +Q++ L +YKWRDS AR
Sbjct: 377 DLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQLSVLANIYKWRDSVARG 436
Query: 438 LDESTTYLLPNHMLLSLSENLP 459
DEST Y+LPN LL +++ +P
Sbjct: 437 EDESTGYILPNKTLLEIAKQMP 458
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 120 bits (290), Expect = 3e-27
Identities = 73/184 (39%), Positives = 100/184 (54%), Gaps = 27/184 (14%)
Query: 278 VFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSLKFLLMKYCGVDTDKTYRLAD 337
+FHGAD+DVLWLQRDF +Y+V +FDT A + L P SL +LL YCGV TDKT + D
Sbjct: 303 IFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQRED 362
Query: 338 WRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNAGQTNMLLSVFEDSRQTCASTYN- 396
WR+RPL +I+YAR D HYLLY+ N L S + A TY+
Sbjct: 363 WRLRPLTPEMIQYARCDAHYLLYI---------------ANCLAS------ELHAKTYDA 401
Query: 397 KEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLLSLSE 456
+ +D+ + + N D + + WRD AR DES Y+L + + SL+
Sbjct: 402 SDSPNDKINFFFEASHRSNMD-----LVWKICAWRDLMARMHDESLRYVLSDQAIASLAV 456
Query: 457 NLPR 460
++PR
Sbjct: 457 SVPR 460
Score = 57.2 bits (132), Expect = 4e-08
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 167 HPYQMELD--MYNPPSQFIDXXXXXXXXXXXXXXTKFTYIDIESKLDELVEHLMAVEQIA 224
HP++ E+ + NPP D T + +++ +++L++L L + A
Sbjct: 113 HPFEEEITSLLNNPP----DFQNFMPGDRCPEMSTSYNWVETDAQLEDLARLLDDEKAFA 168
Query: 225 VDVEHHSYRTYQGITCLIQISTDEGGDFIIDALAVREHIHKLNVVFTDP 273
VD E HS R++ G T L+QIST + D++ID +A+ + + L VF +P
Sbjct: 169 VDTEQHSLRSFLGYTALMQISTQK-ADYLIDTIALHDVMSILRPVFANP 216
>03_01_0397 +
3086142-3086489,3087097-3087252,3088043-3088201,
3088305-3088388,3089266-3089348,3089486-3089531,
3089825-3089912,3090009-3090178,3090317-3090430,
3090497-3090604,3090987-3091202
Length = 523
Score = 110 bits (264), Expect = 4e-24
Identities = 53/111 (47%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 199 TKFTYIDIESKLDELVEHLMAVEQIAVDVEHHSYRTYQGITCLIQISTDEGGDFIIDALA 258
T FT ++ ++ L +L + L +V + AVD+EH+ YR++QG+TCL+QIST DF++D L
Sbjct: 143 TPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQIST-RTEDFVVDTLK 201
Query: 259 VREHIHK-LNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAK 308
+R +I L F DP K KV HGAD D++WLQRDF +Y+ LFDT K
Sbjct: 202 LRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQVQK 252
Score = 72.9 bits (171), Expect = 8e-13
Identities = 33/106 (31%), Positives = 61/106 (57%)
Query: 387 SRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDSQARQLDESTTYLL 446
S + C Y KE++ D S++ +Y + + D +Q+A + L++WRD AR++DEST Y+L
Sbjct: 254 SNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVYALHQWRDYIAREVDESTGYVL 313
Query: 447 PNHMLLSLSENLPRELQGVNACCDPMPPFVKQNVITIHRMILSCRE 492
PN L+ +++ +P + + PFV +N+ + +I + E
Sbjct: 314 PNKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATE 359
>04_01_0283 +
3768732-3768792,3769235-3769876,3769907-3770076,
3770134-3770511,3770602-3770991
Length = 546
Score = 42.7 bits (96), Expect = 0.001
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 14/186 (7%)
Query: 510 MNAGIEQIHYEMHDLDHEAE-YREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMM 568
+ + IE+I M ++ E + R E +++N C ++ + EA A+
Sbjct: 142 LKSRIEEIQGNMDMIESENDKLRSEALIAEQKLNICEAEIERLKMELGGLTEAKEAAAKA 201
Query: 569 FPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSV-----APQ 623
F EEI KD+++++ K+ I +L+E E +K ++++ I++ K + A +
Sbjct: 202 FDTQN-EEITKDLEDLKTKLEEIKTNKDLVESENEEKYSQSEAEIKYLKQVMGAVVEAKE 260
Query: 624 AAA---ANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKK----IDVAKKEVTAG 676
AAA A + E K + ++ VTE + + G+ KK + AK+ T
Sbjct: 261 AAAKAFAAEKEDIMKESDNLKRKVTEIQDSKKHGQFELEVTSLKKELGALQEAKETTTKA 320
Query: 677 YQYQNA 682
++ + A
Sbjct: 321 FEVEKA 326
>07_03_0232 +
15539586-15539696,15541524-15541727,15542612-15542674,
15542896-15543027,15543766-15543889,15545052-15545365,
15545538-15545614,15545716-15545851,15546352-15546555,
15546630-15546689
Length = 474
Score = 37.9 bits (84), Expect = 0.028
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 308 KSLGLPALSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKN 367
K L SL + + GV K + +DW RPL + I+YA D +YLL ++ +
Sbjct: 147 KRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQ 206
Query: 368 QI-IEKNAGQTNMLLS 382
+I E TN L S
Sbjct: 207 KIRTEGKCLPTNELTS 222
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 36.3 bits (80), Expect = 0.084
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 5 YDLFKTYPEFNEISNQISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDSLLDR 64
Y+ + + E N S + Q +A++ +EL+ ++LK ++ I++L + NDSL DR
Sbjct: 266 YEKIEKFFELN--SESVVQEMAERVDELVDKVMN-LELKFPKQSAQIKQLKEDNDSLKDR 322
Query: 65 INISIDTVSGENLPSEAFAS-GLNDNPSHNSSPWNKPVISEKKMGSTIF 112
++ D ++ + PS+ L ++ + + VI E+ + ST+F
Sbjct: 323 LDDLQDEIALRDDPSDLSEQLKLAEDELNRVKALERSVIEEEVLVSTVF 371
>05_01_0294 -
2291175-2291223,2291591-2292039,2292143-2292211,
2292397-2292449,2292492-2294478
Length = 868
Score = 35.1 bits (77), Expect = 0.19
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 583 EMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRK 642
E + V A QG I +E L K+ A S + DK A D +T +R +K
Sbjct: 595 ECASNVEAFLQG---INKEELNKIVNALSSEDGDKEKRRALAQFEGRRNLDPETLRRVKK 651
Query: 643 IVTENAEEQNVGRAHKNEHVPKKIDVAKKEV 673
I+ EEQ G +E++ K ID A +V
Sbjct: 652 IILAEGEEQATGPKEFDEYM-KLIDAALPKV 681
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 33.1 bits (72), Expect = 0.78
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 598 IEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQN 652
I+E + A + E KT +AP A++ + PDT RK ++TE +E++
Sbjct: 673 IDEPTQVPVAAADASHEPRKTPLAPAGEASSPSSPDTIDELRKPLLITEKIQEED 727
>05_03_0667 +
16781857-16782001,16784506-16784544,16785229-16785910,
16786003-16786087,16786747-16786888,16787391-16787575,
16788011-16788143,16788317-16788405,16788530-16788604,
16789060-16789173,16789264-16789305
Length = 576
Score = 32.7 bits (71), Expect = 1.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 317 LKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQ 368
L L K G +KT R ++W RPL +YA +D L++++ +K Q
Sbjct: 495 LSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHHVKGQ 546
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 32.3 bits (70), Expect = 1.4
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 570 PEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSH-----IEHDKTSVAPQA 624
P E +A++ EA+VA + E +++++A+ E K VAP+
Sbjct: 38 PAAPAEAVAEEAAPAEAEVAETKEAEPAAAEPAAEEVKEAEPEPAEPEAEPAKEEVAPEP 97
Query: 625 AAANDTEPDTKTAQRKRKIVTENAEEQ 651
AAA E + K A+ ++ E EE+
Sbjct: 98 AAA--AEAEAKEAEPAAQVAEEVKEEE 122
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 32.3 bits (70), Expect = 1.4
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 528 AEYREEQKSNVEQVNYCLTVTTKITS-KFNPEVEAFIPASMMFPEGTIEEIAKDIKEMEA 586
+E R E+ S + V+ + + TS + + E A + PE + E+++ ++ M
Sbjct: 2793 SELRLEELSQTKSVSQSIVANAEETSTRSDIETPAMDASESKSPESDVHELSERVEFMGP 2852
Query: 587 KVAAISQGNELIEEEVLQKLQKAQS 611
+A + NEL +E+++ + A++
Sbjct: 2853 TPSANEKSNELHSQELVKMISAAET 2877
>03_01_0306 +
2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 564 PASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIE------EEVLQKLQKAQSHIEHDK 617
PA + F + IEE ++ + KVA SQ +L++ ++ ++KL++ + E
Sbjct: 63 PAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKLEELRQEKEAAT 122
Query: 618 TSVAPQAAAA 627
T+ A AAAA
Sbjct: 123 TAAAAAAAAA 132
>02_01_0161 -
1123890-1124210,1124599-1124673,1124841-1124903,
1125020-1125358
Length = 265
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 596 ELIEEE--VLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNV 653
E +EE+ V+ L + SH+ + ++ T K QRK K E+ EE+ V
Sbjct: 113 EWVEEQRAVVASLSQENSHLSKQIEEYRVRLQSSRSTNDGLKQMQRKLKRQREHEEEEEV 172
Query: 654 GRAHKNEHVPKKIDVAK 670
R + E D+ +
Sbjct: 173 NRKRRVEAAAAAADIVR 189
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 31.9 bits (69), Expect = 1.8
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 527 EAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMMFP--EGTIEEIAKDIKEM 584
+ +YRE+ K +++ T K TSK + + +S + P E I ++ + E
Sbjct: 396 DVKYREDLKHLKQKIKKLEDKTEKDTSKIDESTKEVEESSSLIPQLEEEIPKLQEKFNEE 455
Query: 585 EAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRK 640
E + I + + E + KL + +S +E + + + + + K + K
Sbjct: 456 EKVLEQIKENSREETERLRSKLTQVRSELEPWENQIIEHKGSLDVASAEKKLMKEK 511
>03_01_0372 +
2895807-2895883,2896557-2896647,2896741-2896839,
2897220-2897268,2897269-2897405,2898027-2898248,
2898335-2898488,2898574-2898723,2898890-2898978,
2899632-2899844,2900180-2900314,2900461-2900640,
2901004-2901111,2901215-2901340,2901421-2901550,
2901637-2901729,2902067-2902192,2902294-2902304
Length = 729
Score = 31.9 bits (69), Expect = 1.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 573 TIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEH 615
T EE A I +E ++A + EL+ EE+ +K Q + H
Sbjct: 546 TTEEFASQISSLEERIADLISEKELVYEELKSTQEKMQQEMRH 588
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 31.5 bits (68), Expect = 2.4
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 29 SNELIGTEQPAV-KLKCE-DFTSN-IEKLADVNDSLLDRIN-ISID-TVSGENLPSEAFA 83
S L+GT+ V ++K E TSN ++ L DS LD+ N + D T S + S
Sbjct: 225 SQNLLGTKDINVPRIKGERHLTSNAVDSLLKRQDSSLDQYNTVDTDNTGSSQKCVSSEVN 284
Query: 84 SGLNDNPSHNSSPW 97
S ++ S NSSPW
Sbjct: 285 SRKSNRSSSNSSPW 298
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 31.5 bits (68), Expect = 2.4
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 591 ISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRK-IVTENAE 649
+ G ++ K +K+++ + + + + A++ EP T+ ++K+K + E +
Sbjct: 439 VDDGEKVDASAKKSKKKKSKAEADGEAMDLDKPSNVADEAEPGTEKKKKKKKHKLEEEPQ 498
Query: 650 EQNVGRAHKN-----EHVPKKIDVAKKEVTAGYQYQNATYDK 686
EQ AH N PKK +EV+ + + AT K
Sbjct: 499 EQEKSVAHANGDAEENGTPKKKKKKNREVSEDAEPKTATEGK 540
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 30.7 bits (66), Expect = 4.2
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 514 IEQIHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMMFPEGT 573
I +H + L+H + REE + ++ N + +V S +G
Sbjct: 507 IATLHQRIEQLEHMEKEREEMQRQLDTYN---------LDNASRDVHCLKGESSEEEKGL 557
Query: 574 IEEIAKDIKEMEAKVAAISQ-GNELIEEEV-LQKLQKAQSHIEHDKTSV 620
E++ K + +++ +A+S+ +EL + E+ L K ++A H+E K S+
Sbjct: 558 HEKLQKALSDLDEAYSAVSERESELSQIEINLHKQKQAMEHLEELKLSM 606
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 30.7 bits (66), Expect = 4.2
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 598 IEEEVLQKLQKAQS-HIEHDKTSVAPQAAAANDTEPDTKTAQR---KRKIVTEN--AEEQ 651
+E+ V K Q+A+S + +D+T A + A A + P+T Q K ++ N AEE
Sbjct: 23 VEKAVEDKPQEAESISVTNDETPQADETATAVEVNPETSEVQEVADKSEVEDTNPAAEET 82
Query: 652 NVGRAHKNEHVPK-KIDVA 669
N + E P+ KI+ A
Sbjct: 83 NETAEEEAEEKPEIKIETA 101
>11_08_0021 +
27716298-27716478,27717137-27717309,27717408-27717578,
27717967-27718077,27718168-27718245,27718642-27718832,
27718873-27718958,27719202-27719206,27719301-27719378,
27719465-27719527,27719597-27719680,27720049-27720209,
27720377-27720416,27720774-27720893,27720993-27721211,
27721927-27722100,27722202-27722883,27722986-27723185,
27723269-27723407,27723502-27723677
Length = 1043
Score = 30.3 bits (65), Expect = 5.5
Identities = 10/76 (13%), Positives = 34/76 (44%)
Query: 501 HIPSGIRNMMNAGIEQIHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVE 560
++PS ++ ++ + + + + LD ++Y + + ++ CL + + ++ +
Sbjct: 242 YMPSRVKQILPSFCKDMFRILESLDFNSQYEDRATTRLKTAKRCLIILCTLVTRHRKHAD 301
Query: 561 AFIPASMMFPEGTIEE 576
+ P+GT +
Sbjct: 302 EILTLQFSQPDGTYSQ 317
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 30.3 bits (65), Expect = 5.5
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 315 LSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNA 374
++ +FLL G D +K R+ +IR + ++ I+ MD H + ++N I+E+
Sbjct: 170 ITRQFLLHIVSGTDVEKDVRVYKRKIRAVGEMEIRSDLMDAHLYAFKRTTLQN-ILEEKE 228
Query: 375 GQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKN 415
++ L V ++ V+ D SH+ Y S +N
Sbjct: 229 SYRSIRLEVLP------YLVRSQLVVGDASHLSGYSFSAQN 263
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 30.3 bits (65), Expect = 5.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 625 AAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKK 665
A + +P + RKRK+V + E NVG+A E K+
Sbjct: 173 AQPSSPKPTNQPGSRKRKLVLSDDEGDNVGKAGSKESTDKE 213
>09_02_0378 - 8146138-8147091
Length = 317
Score = 29.9 bits (64), Expect = 7.3
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 583 EMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAAN---DTEPDTKTAQR 639
E EA A ++Q N+ EE + K+Q + S E +SV +++ D + K +
Sbjct: 104 EEEAAAAYLAQSNQFHEELMALKIQSSVSEQEDLSSSVTISCVSSSQSCDQKIQAKPQEH 163
Query: 640 KRKIVTENAE--EQNVGRAHKNEHVPKKIDVAKK 671
KR V N E EQ + + + + +V K+
Sbjct: 164 KRVSVVVNRETVEQKFKAQPQAQKIKAQPEVQKR 197
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 29.9 bits (64), Expect = 7.3
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 580 DIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDK-TSVAPQAAAANDTEPDTKTAQ 638
D+K++ AK+ + + E ++ E+ Q++ K S++ +K + + ++ A
Sbjct: 252 DVKQIRAKIVELDESTEKLKSEI-QEMDKNISNLAAEKEAKLGGEMKTLSEKVDKLSHAL 310
Query: 639 RKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKEV 673
K V N EE E + K I+ K+ +
Sbjct: 311 IKETSVMNNQEETIKSEEKGAEKILKNIEDIKRSI 345
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 29.9 bits (64), Expect = 7.3
Identities = 20/97 (20%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 578 AKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTA 637
A D++E +++ + + + +E ++Q+ + S ++ ++ Q ++ E DT
Sbjct: 775 AGDLQEKN-RLSRMLEHKNIFQERIVQRREAEFSRLKKERDERTSQLISSRKRERDTV-- 831
Query: 638 QRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKEVT 674
++ + N EEQ + R + E K+ + K+E T
Sbjct: 832 --RKLMYYLNLEEQRLQRLREEEEARKQEERRKREET 866
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 29.5 bits (63), Expect = 9.7
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 557 PEVEAFIPASMMFPEGT---IEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHI 613
P +A A +M + T E ++E+ A+ A Q E EE Q+ KA +
Sbjct: 653 PPEDALKLAPVMVTDDTSLDFESQRAKMRELAAQRAKQLQAEE--EERTKQQRAKALVKL 710
Query: 614 EHDKTSVAPQAAAANDTEPDTKTAQRKRKI-VTENAEEQNV 653
E + ++ND PD Q+K+K+ E A+ N+
Sbjct: 711 EELNRRSSVHQKSSNDVPPDIADVQQKQKVGFEETAKPANL 751
>07_01_0166 +
1164903-1165144,1165839-1166074,1166719-1166781,
1166808-1167017,1167098-1167263,1167537-1167780,
1167970-1168362
Length = 517
Score = 29.5 bits (63), Expect = 9.7
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 570 PEGTIEEIAKDIKEMEAKVAAISQGNEL---IEEEVLQKLQKAQSHIEHDKTSVAPQAAA 626
PEG IE+++ + E+E K+ + Q + +E+++++ +++ E + T P AA+
Sbjct: 370 PEGEIEQLSGILSELEKKLEDLEQAMSTPSSVMDEIMKRI-ASKAGGEQNATDTMPAAAS 428
Query: 627 ANDT 630
N +
Sbjct: 429 FNSS 432
>05_07_0001 + 26976510-26977382
Length = 290
Score = 29.5 bits (63), Expect = 9.7
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 564 PASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQ 623
PA+ + G ++ + + +++E K+AA+ N + E +L+ S D + A
Sbjct: 117 PAAKAYDAGELDALREAKRDLEDKLAAVEHENRFLGAEA-YRLEGIVSQARED-IATAEH 174
Query: 624 AAAANDTEPDTKTAQRKRKIVTENAEEQN-VGRAHKNEHVPKKIDVAKKEVTA 675
A AA++ E + KR AE+ N + + ++ +KEV A
Sbjct: 175 AIAASEGEAALLRDEVKRVKELLAAEKSNHEAERRRAADLDAELKGVQKEVAA 227
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 29.5 bits (63), Expect = 9.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 205 DIESKLDELVEHLMAVEQIAVDVEHHSYRTYQGITC 240
++E KLDELV L AV + S + +G+TC
Sbjct: 169 NLEVKLDELVNPLKAVADYRTSITGLSKKDLKGVTC 204
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 29.5 bits (63), Expect = 9.7
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 538 VEQVNYCLTVTTKITSKFNPEVEAFIPASMMFPEGTIEEIAKDIKEMEAKVAAISQGNEL 597
V+ V C KI E EA I AS + +E++A D++ K+ S+ E
Sbjct: 384 VQHVEECQVAEDKIRRL---ESEAEISASNI---SQLEKVASDLEGRVQKLLEDSRSAEN 437
Query: 598 IEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQ---RKRKIVTENAEEQ 651
++E+LQK+ K +S ++ + + N+ DT++ Q KR E E Q
Sbjct: 438 HKQELLQKILKLESD---NQELLGRVQSVLNEKSNDTESLQGEIAKRDQQVETLENQ 491
>03_01_0146 -
1161005-1161133,1161239-1161283,1161369-1161469,
1161585-1161691,1161823-1161924,1162028-1162250,
1162343-1162382
Length = 248
Score = 29.5 bits (63), Expect = 9.7
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 402 DESHIPLYIRSKKNFDNQQMAAL-KMLYKWRDSQARQLDESTTYLLPNHMLLSLSENL 458
D++H + + S N DN+++ L + + K +D + +L+E T + H+ L+++E L
Sbjct: 129 DDNHAKIDVSSIANMDNREIIELQRNVIKEQDDELDKLEE--TIVSTKHIALAINEEL 184
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.5 bits (63), Expect = 9.7
Identities = 13/65 (20%), Positives = 35/65 (53%)
Query: 571 EGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDT 630
E +I+ + ++ +++ +++ + N + +++ + + K + E +T A A+ ND
Sbjct: 1112 EDSIKNLESELAQLKEELSVQMESNSSLNKQLEEAILKVSNLTEELETVQAETASKINDM 1171
Query: 631 EPDTK 635
E +TK
Sbjct: 1172 ETNTK 1176
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,650
Number of Sequences: 37544
Number of extensions: 789781
Number of successful extensions: 2279
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2251
Number of HSP's gapped (non-prelim): 49
length of query: 709
length of database: 14,793,348
effective HSP length: 87
effective length of query: 622
effective length of database: 11,527,020
effective search space: 7169806440
effective search space used: 7169806440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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