Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000626-TA|BGIBMGA000626-PA|IPR002562|3'-5' exonuclease,
IPR002121|HRDC, IPR012588|PMC2NT, IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
(709 letters)
Database: mosquito
2123 sequences; 516,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 28 0.97
AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein p... 28 0.97
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 27 1.7
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 26 3.9
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 25 5.2
AJ438610-3|CAD27475.1| 190|Anopheles gambiae putative RHO small... 25 9.1
AF513638-1|AAM53610.1| 210|Anopheles gambiae glutathione S-tran... 25 9.1
>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
Length = 1133
Score = 27.9 bits (59), Expect = 0.97
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 574 IEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHD----KTSVAPQAAAAND 629
+ ++ K I+E +AK+ + + + EE+ Q + A +E + + S+ + A +D
Sbjct: 795 LAKLQKGIEEEQAKLDQVRRTVQQ-EEQTAQAKKDAMGAVEAEIARIQASIDKEQQARHD 853
Query: 630 TEPDTKTAQRKRKIVTENAEEQ 651
+ + K Q+ K TE+ EE+
Sbjct: 854 LQTNHKVKQQALKRSTESMEER 875
>AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein
protein.
Length = 344
Score = 27.9 bits (59), Expect = 0.97
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 564 PASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQ 623
P +++ + T EE+AK +KEM+ A S G E + K+++AQ+ Q
Sbjct: 117 PEALLISDCTSEELAKLLKEMKQSDALKSVG------ETISKVRRAQN---GGMLLELKQ 167
Query: 624 AAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNE 660
++A+ P K A + + V A + + H +E
Sbjct: 168 GSSASAIAPKVKEAVKGKASVRTLAPSKMIEIMHLDE 204
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 600 EEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDT-KTAQRKRKIVTENAEEQNVGRAHK 658
+E +KL+K Q + +V +A + E + K R++K+V ++ ++
Sbjct: 961 QEAGRKLKKLQDSKDKMSRNVNQKAMVLLEREEEQYKEVMRRKKVVEDDKKKIQAIITDL 1020
Query: 659 NEHVPKKIDVAKKEVTAGY 677
+E KK+ VA EV +
Sbjct: 1021 DEEKKKKLKVAWSEVDENF 1039
Score = 25.8 bits (54), Expect = 3.9
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 537 NVEQVNYCLTVTTKITSKFNPEVEAFIPASMMFPEGTIEEIAKD--IKEMEAKVAAISQG 594
NV N+ L + +IT N + + ++ E +D +K +E K A +++
Sbjct: 137 NVNNPNF-LIMQGRITKVLNMKPAEILSMIEEAAGTSMYEAKRDSALKLIEKKDAKLNEL 195
Query: 595 NELIEEEVLQKLQKAQSHIEH 615
+I EE+ KL+K + EH
Sbjct: 196 YAVIREEIEPKLEKLRKEREH 216
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 15 NEISNQ-ISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEK 53
N+IS + I +VA+ + EL+G E L C + +++
Sbjct: 577 NKISGRKIDPSVARFAEELVGKENVTTALSCISYDPEVDQ 616
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 25.8 bits (54), Expect = 3.9
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 587 KVAAISQGNELIEEEVLQKLQKAQSHIEHDKTS---VAPQAAAANDTEPDTKTA-QRKRK 642
K A I + + IE E + L++ + I+H KTS + Q + D T+ +R +
Sbjct: 423 KKAQIEENYKKIESEKNEALKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGTSKERIHE 482
Query: 643 IVTE--NAEEQNVGRAHKNEHVPKKIDVAKKEVTAGYQYQ-NATYDKFYNV 690
+ +E N EQ +G A ++H + K+EV ++ + YD+ N+
Sbjct: 483 LQSELDNVREQ-LGDAKIDKHEDAR-RKKKQEVVELFKLEVPGVYDRMINM 531
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 573 TIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQ 610
TIE + ++E+ + + Q NE + +E QK ++ +
Sbjct: 811 TIELVDAHLEELRVRFECLPQANESVADEYAQKKRQLE 848
>AJ438610-3|CAD27475.1| 190|Anopheles gambiae putative RHO small
GTPase protein.
Length = 190
Score = 24.6 bits (51), Expect = 9.1
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 551 ITSKFNPEVEAFIPASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQ 610
+TSK+ PE++ P + + GT ++ +D +E + +A QG ++ E QKL
Sbjct: 96 VTSKWYPEIKHHCPDAPIILVGTKIDLRED-RETISLLA--DQGLSALKREQGQKLANKI 152
Query: 611 SHIEHDKTSVAPQ 623
+++ + S Q
Sbjct: 153 RAVKYMECSALTQ 165
>AF513638-1|AAM53610.1| 210|Anopheles gambiae glutathione
S-transferase D3 protein.
Length = 210
Score = 24.6 bits (51), Expect = 9.1
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 556 NPEVEAFIPASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEH 615
+P+V + + + F GT+ + DI + K E +E ++KL+KA +EH
Sbjct: 85 DPKVRSVVNQRLFFDIGTLYKQIIDIIHLVVK-------KEQPTDEQMEKLKKAMDLLEH 137
Query: 616 DKTSVAPQAA 625
T + AA
Sbjct: 138 FLTERSYAAA 147
Database: mosquito
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 516,269
Number of sequences in database: 2123
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,710
Number of Sequences: 2123
Number of extensions: 27665
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 10
length of query: 709
length of database: 516,269
effective HSP length: 69
effective length of query: 640
effective length of database: 369,782
effective search space: 236660480
effective search space used: 236660480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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