GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000626-TA|BGIBMGA000626-PA|IPR002562|3'-5' exonuclease,
IPR002121|HRDC, IPR012588|PMC2NT, IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
         (709 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   2.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   8.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   8.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 259 VREHIHKLNVVFTDPKKLKVFHGAD 283
           ++ H H L + F DPK    FH A+
Sbjct: 507 LKGHAHWLTLHFKDPKVESAFHNAE 531


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 266 LNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDT 303
           L++VF  P  +KV H  D +V  L     +YL G  D+
Sbjct: 479 LSLVF--PNDIKVDHEYDQNVWVLSNKLAMYLYGSIDS 514


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 9/58 (15%), Positives = 25/58 (43%)

Query: 633 DTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKEVTAGYQYQNATYDKFYNV 690
           D +  +RK+        ++   +  K +++P ++   +K +          +DK+ N+
Sbjct: 125 DNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLFENGVEIGINFDKYDNI 182


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 279 FHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSLKFLLM 322
           F G   D++ +++    ++  +++ Y     +GL A    FLL+
Sbjct: 42  FFGTTKDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLL 85


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,352
Number of Sequences: 429
Number of extensions: 8431
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 709
length of database: 140,377
effective HSP length: 63
effective length of query: 646
effective length of database: 113,350
effective search space: 73224100
effective search space used: 73224100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)