Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000626-TA|BGIBMGA000626-PA|IPR002562|3'-5' exonuclease,
IPR002121|HRDC, IPR012588|PMC2NT, IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing pro... 254 2e-67
At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro... 227 3e-59
At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing pro... 186 6e-47
At1g56310.1 68414.m06473 3'-5' exonuclease domain-containing pro... 40 0.006
At5g64910.1 68418.m08165 expressed protein ; expression support... 37 0.053
At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing pro... 35 0.16
At2g04970.1 68415.m00518 hypothetical protein similar to At2g152... 35 0.16
At4g33740.2 68417.m04791 expressed protein 33 0.49
At4g33740.1 68417.m04790 expressed protein 33 0.49
At1g75130.1 68414.m08725 cytochrome P450 family protein similar ... 33 0.86
At4g40020.1 68417.m05666 hypothetical protein 32 1.1
At1g58070.1 68414.m06581 expressed protein 32 1.1
At2g07260.1 68415.m00833 hypothetical protein 32 1.5
At1g26665.2 68414.m03248 expressed protein 32 1.5
At1g26665.1 68414.m03247 expressed protein 32 1.5
At5g41140.1 68418.m05001 expressed protein 31 2.0
At4g13870.2 68417.m02149 Werner Syndrome-like exonuclease (WEX) ... 31 2.6
At3g47270.1 68416.m05135 hypothetical protein similar to At2g049... 31 2.6
At5g55820.1 68418.m06956 expressed protein 31 3.5
At3g11590.1 68416.m01416 expressed protein 31 3.5
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 31 3.5
At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing pro... 31 3.5
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont... 30 4.6
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P... 30 4.6
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 4.6
At5g03670.1 68418.m00326 expressed protein 30 6.1
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 30 6.1
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 29 8.0
At4g33200.1 68417.m04727 myosin, putative similar to myosin (GI:... 29 8.0
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 29 8.0
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin... 29 8.0
>At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein low similarity to SP|Q01780
Polymyositis/scleroderma autoantigen 2 {Homo sapiens};
contains Pfam profiles PF00570: HRDC domain, PF01612:
3'-5' exonuclease
Length = 838
Score = 254 bits (621), Expect = 2e-67
Identities = 148/446 (33%), Positives = 244/446 (54%), Gaps = 13/446 (2%)
Query: 199 TKFTYIDIESKLDELVEHLMAVEQIAVDVEHHSYRTYQGITCLIQISTDEGGDFIIDALA 258
T F ++ L ELV L +VE+ AVD+EH+ YR++QG+TCL+QIST D+I+D
Sbjct: 226 TPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQIST-RTEDYIVDTFK 284
Query: 259 VREHIHK-LNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSL 317
+R HI L +F DPKK KV HGAD D++WLQRDFG+Y+ LFDT A++ L L SL
Sbjct: 285 LRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSL 344
Query: 318 KFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMK---NQIIEKNA 374
+FLL +CGV +K Y+ ADWRIRPLP+ + +YAR DTHYLLY++ ++K ++ + +A
Sbjct: 345 EFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDA 404
Query: 375 GQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDSQ 434
+ LL V++ S C Y KE++ + S++ +Y F+ Q+A + L +WRD
Sbjct: 405 HTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQLAIVAGLCEWRDFI 464
Query: 435 ARQLDESTTYLLPNHMLLSLSENLPRELQGVNACCDPMPPFVKQN---VITIHRMILSCR 491
AR DEST Y+LPN +LL +++ +P + + P++++N V+++ R +
Sbjct: 465 ARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIERNVDSVVSVIRQSMQHY 524
Query: 492 ELPKDAQIFHIPSGIRNMMNAGIEQI--HYEMHDLDHEAEYREEQKSNVEQVNYCLTVTT 549
+ A + N+M+ IE I ++H D + +E S +E +
Sbjct: 525 AAFESAALSLKDVSPGNVMDKNIEPISEKKDLHTGDVASPSLKENSSQLESTRDLIMGAA 584
Query: 550 KITSKFNPEVEAFIPASMMFPEGTIEEIAKDIKEMEAKVAA--ISQGNELIEEEV-LQKL 606
F A + ++ + + + A+ S+ +E ++E+V L+++
Sbjct: 585 NTNEGRGLGSGLFGSAKVSAAVRISKKPSSGLGALLGNAASKKKSRTDEKVKEDVKLEQI 644
Query: 607 QKAQSHIEHDKTSVAPQAAAANDTEP 632
+ + + H T P + + ++T P
Sbjct: 645 RSSVNLSFHSFTEKVPDSKSTSETSP 670
>At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein similar to SP|Q01780 Polymyositis/scleroderma
autoantigen 2 {Homo sapiens}; contains Pfam profiles
PF00570: HRDC domain, PF01612: 3'-5' exonuclease
Length = 738
Score = 227 bits (554), Expect = 3e-59
Identities = 121/282 (42%), Positives = 174/282 (61%), Gaps = 11/282 (3%)
Query: 199 TKFTYIDIESKLDELVEHLMAVEQIAVDVEHHSYRTYQGITCLIQISTDEGGDFIIDALA 258
T F ++ L++L L +VE+ AVD+EH+ YRT+QG+TCL+QIST D+I+D
Sbjct: 226 TPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQIST-RTEDYIVDIFK 284
Query: 259 VREHIHK-LNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSL 317
+ +HI L +F DPKK KV HGAD D++WLQRDFG+Y+ LFDT A++ L L SL
Sbjct: 285 LWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERNSL 344
Query: 318 KFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNAGQT 377
+FLL YCGV +K Y+ ADWRIRPLPDV+ +YAR DTHYLLY++ VM+ + + A +
Sbjct: 345 EFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRME-LHTMAKED 403
Query: 378 NMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDSQARQ 437
+V TCA Y K+ HI ++ N + Q++ L+ L +WRD AR
Sbjct: 404 ECTSAV-----MTCACNYMKKSFGLGIHIFTFM---GNLNAVQLSILQGLCEWRDRIARA 455
Query: 438 LDESTTYLLPNHMLLSLSENLPRELQGVNACCDPMPPFVKQN 479
DEST Y+LPN L +++ +P + + P++++N
Sbjct: 456 DDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLERN 497
>At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing
protein similar to SP|Q12149 Exosome complex exonuclease
RRP6 (EC 3.1.13.-) (Ribosomal RNA processing protein 6)
{Saccharomyces cerevisiae}
Length = 880
Score = 186 bits (452), Expect = 6e-47
Identities = 114/311 (36%), Positives = 160/311 (51%), Gaps = 23/311 (7%)
Query: 167 HPYQMELDMY--NPPSQFIDXXXXXXXXXXXXXXTKFTYIDIESKLDELVEHLMAVEQIA 224
HPY+ E+ + NP +F + +++ ES+L EL E L + A
Sbjct: 87 HPYETEITVLLENPQIEF----GFLRGECSLEMSDSYVWVETESQLKELAEILAKEQVFA 142
Query: 225 VDVEHHSYRTYQGITCLIQISTDEGGDFIIDALAVREHIHKLNVVFTDPKKLKVFHGADS 284
VD E HS R++ G T LIQIST E DF++D +A+ + + L VF+DP KVFHGAD+
Sbjct: 143 VDTEQHSLRSFLGFTALIQISTHEE-DFLVDTIALHDVMSILRPVFSDPNICKVFHGADN 201
Query: 285 DVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSLKFLLMKYCGVDTDKTYRLADWRIRPLP 344
DV+WLQRDF +Y+V +FDT A + L P SL +LL CGV T+K + DWR RPL
Sbjct: 202 DVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLS 261
Query: 345 DVLIKYARMDTHYLLYV----WRVMKNQIIEKNAG---QTNMLLSVFEDSRQTCASTYNK 397
+ +++YAR D HYLLY+ +K E ++ + + LL S TC Y K
Sbjct: 262 EEMVRYARTDAHYLLYIADSLTTELKQLATEDSSSPDDRFHFLLEASRRSNMTCLQLYTK 321
Query: 398 EV------IHDESHIPLYIR---SKKNFDNQQMAALKMLYKWRDSQARQLDESTTYLLPN 448
E S I ++ K N ++ L WRD R DEST Y+L +
Sbjct: 322 ETEDFPGSAASSSIIYRHLNGHGDKSNISLNAEELVRKLCAWRDLMGRIHDESTRYVLSD 381
Query: 449 HMLLSLSENLP 459
++ LS P
Sbjct: 382 QAIVGLSCKQP 392
>At1g56310.1 68414.m06473 3'-5' exonuclease domain-containing
protein contains Pfam profile PF01612: 3'-5' exonuclease
Length = 582
Score = 39.9 bits (89), Expect = 0.006
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 313 PALSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEK 372
P L L K GV +KT R +DW RPL ++YA +D L++++R +++
Sbjct: 494 PFGGLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFRHVRDHPPHD 553
Query: 373 NAGQT 377
++ +T
Sbjct: 554 SSSET 558
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 36.7 bits (81), Expect = 0.053
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 556 NPEVEAFIPASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEH 615
N E EA S EG EE AK+ KE E + AA E EEE ++ + A
Sbjct: 74 NQEEEAAKVESKAAEEGGNEEEAKEDKEEEKEEAAREDKEE--EEEAVKPDESA------ 125
Query: 616 DKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPK 664
S +A A+ +EP + +RKR TE ++ + RA K K
Sbjct: 126 ---SQKEEAKGASSSEPQLRRGKRKRGTKTEAEKKVSTPRAKKRAKTTK 171
>At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing
protein contains Pfam profile PF01612: 3'-5' exonuclease
Length = 505
Score = 35.1 bits (77), Expect = 0.16
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 238 ITCLIQISTDEGGDFIIDALAVR--EHIHKLNVVFTDPKKLKVFHGADSDVLWLQRDFGV 295
+ C + +TD F+ID ++ LN +F P LK+ D+++L F
Sbjct: 55 VACRLSHATDVSDVFLIDLSSIHLPSVWELLNDMFVSPDVLKLGFRFKQDLVYLSSTFTQ 114
Query: 296 Y-LVGLFD------------TYHAAKSLGLPA----LSLKFLLMKYCGVDTDKTYRLADW 338
+ G F Y K G A SL + + + K + +DW
Sbjct: 115 HGCEGGFQEVKQYLDITSIYNYLQHKRFGRKAPKDIKSLAAICKEMLDISLSKELQCSDW 174
Query: 339 RIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIE 371
RPL + YA D H LL ++ V + ++E
Sbjct: 175 SYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVE 207
>At2g04970.1 68415.m00518 hypothetical protein similar to At2g15200,
At1g32830, At2g14140, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 808
Score = 35.1 bits (77), Expect = 0.16
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 571 EGTI-EEIAKD-IKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTS-----VAPQ 623
EGT +EI K +EME + + + EEE + K + + H EHD+T V
Sbjct: 535 EGTEKQEIPKQGDEEMEGEEEKQEEEGKEEEEEKVLKEESVEEHDEHDETEDQEAYVILS 594
Query: 624 AAAANDTEPDTKTAQRKRKIVTENAEEQNV 653
N T P K +Q +++ TE +E+NV
Sbjct: 595 DDEDNGTTPTEKESQPQKEETTEVPKEENV 624
>At4g33740.2 68417.m04791 expressed protein
Length = 227
Score = 33.5 bits (73), Expect = 0.49
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 575 EEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDT 634
EE+A+D +E + K QG E+ EE+ ++ H E D+ Q+ A DT+ D
Sbjct: 125 EEVAEDDEEDKNK-----QGEEVAEED-----EEENKH-EEDEIDEQDQSKNAGDTDKDD 173
Query: 635 KTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKE 672
+T + +++ +E+ H +E + +D A++E
Sbjct: 174 ETLEEEKESGMSENDEKEKETNHADE-IDMTVDEAREE 210
>At4g33740.1 68417.m04790 expressed protein
Length = 227
Score = 33.5 bits (73), Expect = 0.49
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 575 EEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDT 634
EE+A+D +E + K QG E+ EE+ ++ H E D+ Q+ A DT+ D
Sbjct: 125 EEVAEDDEEDKNK-----QGEEVAEED-----EEENKH-EEDEIDEQDQSKNAGDTDKDD 173
Query: 635 KTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKE 672
+T + +++ +E+ H +E + +D A++E
Sbjct: 174 ETLEEEKESGMSENDEKEKETNHADE-IDMTVDEAREE 210
>At1g75130.1 68414.m08725 cytochrome P450 family protein similar to
Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]
Length = 505
Score = 32.7 bits (71), Expect = 0.86
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 508 NMMNAGIE---QIHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFN-PEVEAFI 563
+M N G E ++H EMH+L E R ++VE+ + ++ F +I
Sbjct: 182 DMRNGGEEIELEVHKEMHNLSAEMLSRTAFGNSVEEGKGIFELQERMMRLFYLVRWSVYI 241
Query: 564 PASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQS 611
P FP T EI + K++ + + + N+ E+ LQ S
Sbjct: 242 PGFRFFPSKTNREIWRIEKQIRVSILKLIENNKTAVEKSGTLLQAFMS 289
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 32.3 bits (70), Expect = 1.1
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 575 EEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEP-- 632
EE+ +KE+E +V NE + + ++KL+K S IE ++ ++ P
Sbjct: 335 EELQFALKEIE-RVKV----NEAVANDNIKKLKKMLSEIEVAMEEEKQRSLNRQESMPKE 389
Query: 633 -----DTKTAQRKRKIVT-ENAEEQNVGRAHKNEHVPKKIDVAKKEVT 674
+ K ++++K EN +E+ + K EH KK D KKE T
Sbjct: 390 VVEVVEKKIEEKEKKEEKKENKKEKKESKKEKKEHSEKKEDKEKKEQT 437
>At1g58070.1 68414.m06581 expressed protein
Length = 284
Score = 32.3 bits (70), Expect = 1.1
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 570 PEGTIEEIAKDIKEMEAKVAAISQGNELIEE-----EVLQKLQKAQSHIEHDKTSVAPQA 624
P+G EEI +K++EA++ ++++E EV A+ H K + A
Sbjct: 122 PQGPKEEIMDVLKKLEAEITETKTEVKMLKERESETEVALATLNAELHKNKSKIAKAEAD 181
Query: 625 AAANDTEPDTKTAQRKRKIVTENAEEQ 651
AA TK+ K EN E+Q
Sbjct: 182 AAGKSAAAMTKSVSFKDTKEKENGEDQ 208
>At2g07260.1 68415.m00833 hypothetical protein
Length = 300
Score = 31.9 bits (69), Expect = 1.5
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 582 KEMEAKVAAISQGNELIE-----EEVLQKLQKAQSHIEHDKTS-----VAPQAAAANDTE 631
KE K QG+E +E EE + K + + H EHD+T V N T
Sbjct: 54 KEETEKQENPKQGDEEMEREEGKEEKVPKEENVEEHDEHDETEDQEAYVILSDDEDNGTA 113
Query: 632 PDTKTAQRKRKIVTENAEEQNV 653
P K +Q +++ TE +E+NV
Sbjct: 114 PTEKESQPQKEETTEVPKEENV 135
>At1g26665.2 68414.m03248 expressed protein
Length = 189
Score = 31.9 bits (69), Expect = 1.5
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 3/134 (2%)
Query: 517 IHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMMFPEGTIEE 576
I Y+ +D ++ K N+ QV + T + + + V +F PAS + ++
Sbjct: 18 IRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLH---LLQR 74
Query: 577 IAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKT 636
+ + E++ + N I EVL + ++ E K + A T+ T
Sbjct: 75 LNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKTDA 134
Query: 637 AQRKRKIVTENAEE 650
+ RK + E E+
Sbjct: 135 FKDLRKHILEELEQ 148
>At1g26665.1 68414.m03247 expressed protein
Length = 189
Score = 31.9 bits (69), Expect = 1.5
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 3/134 (2%)
Query: 517 IHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMMFPEGTIEE 576
I Y+ +D ++ K N+ QV + T + + + V +F PAS + ++
Sbjct: 18 IRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLH---LLQR 74
Query: 577 IAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKT 636
+ + E++ + N I EVL + ++ E K + A T+ T
Sbjct: 75 LNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKTDA 134
Query: 637 AQRKRKIVTENAEE 650
+ RK + E E+
Sbjct: 135 FKDLRKHILEELEQ 148
>At5g41140.1 68418.m05001 expressed protein
Length = 983
Score = 31.5 bits (68), Expect = 2.0
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 514 IEQIHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFIPASMMFPEGT 573
IE + ++ + E E +EE+ +N+E TK + N + + + E
Sbjct: 804 IENLRKQVVQVRSELEKKEEEMANLENREASADNITKTEQRSNEDRIKQLEGQIKLKENA 863
Query: 574 IEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQK-AQSHIEHDKTSVAPQAAAANDTE 631
+E +K E E + N + EE+ KL + +Q+ E D+T P+A A TE
Sbjct: 864 LEASSKIFIEKEKDLK-----NRI--EELQTKLNEVSQNSQETDETLQGPEAIAMQYTE 915
>At4g13870.2 68417.m02149 Werner Syndrome-like exonuclease (WEX)
contains Pfam profile PF01612: 3'-5' exonuclease;
identical to Werner Syndrome-like exonuclease
[Arabidopsis thaliana] GP:28195109 gb:AAO33765
Length = 288
Score = 31.1 bits (67), Expect = 2.6
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 266 LNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAA-------KSLGLPALSLK 318
L + D +KV G D D + L D+GV + + D A K GL +L+
Sbjct: 175 LQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGGDKKWGLASLTET 234
Query: 319 FLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKN 367
+ + RL +W PL ++YA D + ++++V+K+
Sbjct: 235 LVCKELL---KPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKD 280
>At3g47270.1 68416.m05135 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
At5g34895, At2g02200
Length = 671
Score = 31.1 bits (67), Expect = 2.6
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 593 QGNELIEEEVLQKLQKAQSHIEHDKTS-----VAPQAAAANDTEPDTKTAQRKRKIVTEN 647
QG+E +E E K + + H EHD+T V N T P K +Q +++ TE
Sbjct: 423 QGDEEMEREE-GKEENVEEHDEHDETEDQKAYVILSDDEDNGTAPTEKESQPQKEETTEV 481
Query: 648 AEEQNV 653
+E+NV
Sbjct: 482 PKEENV 487
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 30.7 bits (66), Expect = 3.5
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 551 ITSKFNPEVEAFIPASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQ 610
IT K + +V+A A +E + +K+ K+ Q E ++++ ++K +K
Sbjct: 1511 ITGKRDVKVKALEAAEASKRIAEQKENDRKLKKEAMKLERAKQEQENLKKQEIEKKKK-- 1568
Query: 611 SHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAK 670
E D+ + A + E K +RKRK E + R + E K++ AK
Sbjct: 1569 ---EEDRKKKEAEMAWKQEMEKKKKEEERKRK------EFEMADRKRQREEEDKRLKEAK 1619
Query: 671 K-EVTAGYQYQNATYDK 686
K + A +Q Q D+
Sbjct: 1620 KRQRIADFQRQQREADE 1636
>At3g11590.1 68416.m01416 expressed protein
Length = 622
Score = 30.7 bits (66), Expect = 3.5
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 504 SGIRNMMNAGIEQIHYEMHDLDHEAEYREEQKSNVEQVNYCLTVTTKITSKFNPEVEAFI 563
S + ++ A IE + E L+ E + R +S +++ L T K E+E
Sbjct: 301 SNEQEVVEAAIESVAGE---LEVERKLRRRFESLNKKLGKELAETKSALMKAVKEIENEK 357
Query: 564 PASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQ 610
A +M E +E+A+DI E +A+V + + + ++EEV ++ + Q
Sbjct: 358 RARVMV-EKVCDELARDISEDKAEVEELKRESFKVKEEVEKEREMLQ 403
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 30.7 bits (66), Expect = 3.5
Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 10/147 (6%)
Query: 531 REEQKSNVEQVNYCLTVTTKITSKFNPEVEAF--IPASMMFPEGTIEEIAKDIKEMEAKV 588
+EE +S + ++ LTV + E+E + A E EE+ K + E++A++
Sbjct: 531 KEELQSVIAKLEEQLTVESSKADTLVSEIEKLRAVAAEKSVLESHFEELEKTLSEVKAQL 590
Query: 589 AAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENA 648
+ +V + K Q H EH +A + N+ Q++ + +
Sbjct: 591 KENVENAATASVKVAELTSKLQEH-EH----IAGERDVLNE---QVLQLQKELQAAQSSI 642
Query: 649 EEQNVGRAHKNEHVPKKIDVAKKEVTA 675
+EQ + K + + +++E+ A
Sbjct: 643 DEQKQAHSQKQSELESALKKSQEEIEA 669
>At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing
protein / K homology domain-containing protein / KH
domain-containing protein contains Pfam profiles
PF01612: 3'-5' exonuclease, PF00013: KH domain
Length = 341
Score = 30.7 bits (66), Expect = 3.5
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 25/159 (15%)
Query: 237 GITCLIQISTDEGGDFIIDALAVREHIHKLNVVFTDPKKL-KVFHGA--DSDVLWLQRDF 293
G C++QI+ +++D + E I K + + KV H DS+ L+ Q F
Sbjct: 71 GKLCIMQIAFSNA-IYLVDVIEGGEVIMKACKPALESNYITKVIHDCKRDSEALYFQ--F 127
Query: 294 GVYLVGLFDTYHAAKSLGLPA---------LSLKFLLM--KYCGVDTDKTYRLAD----- 337
G+ L + DT A + +S LL +YCG+ ++ +
Sbjct: 128 GIRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVSLLADPRYCGISYEEKEEVRVLMRQD 187
Query: 338 ---WRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKN 373
W RP+ +++I+ A D +LLY++ M ++ +++
Sbjct: 188 PKFWTYRPMTELMIRAAADDVRFLLYLYHKMMGKLNQRS 226
>At5g10660.1 68418.m01234 calmodulin-binding protein-related
contains weak similarity to calmodulin-binding proteins
Length = 407
Score = 30.3 bits (65), Expect = 4.6
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 570 PEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAAND 629
P + E ++I ++E V G E EE+ Q Q +S E + + VA
Sbjct: 198 PLASAHEDEEEIVKVETDVHISDHGEEPKEEDKDQFAQPDESGEEKETSPVAASTEEQKG 257
Query: 630 --TEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKKID 667
+ D T Q + EN EE N + + E V KK D
Sbjct: 258 ELIDEDKSTEQIEEPKEPENIEENN---SEEEEEVKKKSD 294
>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family
Length = 457
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 571 EGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQK 605
EG +E + + E EA++ A S+G EL E VL K
Sbjct: 226 EGVVEVVDVENSENEARIEANSRGGELYEVAVLYK 260
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.3 bits (65), Expect = 4.6
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 550 KITSKFNPEVEAFIPASMMFPEGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKA 609
K + K EVE PASM P +++ +D +E Q ELI+ V+QK +KA
Sbjct: 3 KSSKKSVTEVET--PASMTKP---LKKGKRDAEEDLDMQVTKKQKKELID--VVQK-EKA 54
Query: 610 QSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKK 665
+ + V ++ A+D++ + KT + K+ E++ E+ + E P K
Sbjct: 55 EKTVPK---KVESSSSDASDSDEEEKTKETPSKLKDESSSEEEDDSSSDEEIAPAK 107
>At5g03670.1 68418.m00326 expressed protein
Length = 516
Score = 29.9 bits (64), Expect = 6.1
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 512 AGIEQIHYEMHDLDHEAEY-REEQKSNVEQVNYCLTVTTKITSKFNPE-VEAFIPASMMF 569
AG++ + E D E E EE++ ++ + +C +T ++ + E VE +
Sbjct: 366 AGLDPMELEKRMSDQETEEEEEEEEEEMKSLYHCEIITQRVLKTYFEEMVEVPEGVEALI 425
Query: 570 PEGTIEEIAKDIK-EMEAKVAA 590
+ EE+ DI E EA + A
Sbjct: 426 SDLAAEELPSDIDGEAEAAIVA 447
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 571 EGTIEEIAKDIKEMEAKVAAI---SQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAA 627
EG++EE+ I +E KV + ++ L EE+ +L + +E + +
Sbjct: 2255 EGSVEELEYTINVLENKVNVVKDEAERQRLQREELEMELHTIRQQMESARNADEEMKRIL 2314
Query: 628 NDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHV 662
++ D A++ + + N +Q +EH+
Sbjct: 2315 DEKHMDLAQAKKHIEALERNTADQKTEITQLSEHI 2349
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 29.5 bits (63), Expect = 8.0
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 579 KDIKEMEAKVAAISQGNELIEEEVLQK-LQKAQSHIEHDKTSVAPQAAAA---NDTEPDT 634
K+ KE++ KV Q NE +EE+ S + D +V + N+ + +
Sbjct: 227 KEEKEVQEKVV---QANESVEEKAESSGPTPVASPVGKDCNAVVAELEEKLIKNEDDIEE 283
Query: 635 KTAQRKRKI---VTENAEEQNVGRAHKNEHVPKKIDVAKKEV 673
KT + K + ++ EE++V + P+K+D KEV
Sbjct: 284 KTEEMKEQDNNQANKSEEEEDVKKKIDENETPEKVDTESKEV 325
>At4g33200.1 68417.m04727 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]
Length = 1522
Score = 29.5 bits (63), Expect = 8.0
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 576 EIAKDIKEMEAKVAAISQGNELIEEEVL----------QKLQKAQSHIEHDKTSVAPQAA 625
E+ KD ++ + ++ + N ++E+E+L QKL++A+ +TSV
Sbjct: 982 ELKKDNALLKNSMNSLEKKNRVLEKELLNAKTNCNNTLQKLKEAEKRCSELQTSVQSLEE 1041
Query: 626 AANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKKID 667
+ E + + +K I + Q +G H + VP + D
Sbjct: 1042 KLSHLENENQVLMQKTLITSPERIGQILGEKHSSAVVPAQND 1083
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 29.5 bits (63), Expect = 8.0
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 571 EGTIEEIAKDIKEMEAKVAAISQGNELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDT 630
E +EE KD +E + + S G++ +E +Q ++ + I +K + A +
Sbjct: 186 ESVVEEETKDREETKIVDVSESAGDKQVESVDVQSVRDVSAEIAEEKV----KDVEALEV 241
Query: 631 EPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKKIDVAKKEV 673
EP +T+++ + + E + K E + + AK E+
Sbjct: 242 EPKPETSEKVETQLEKARELETEVEVVKAEETAEATEQAKVEL 284
>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
(PFI) almost identical to tubulin folding cofactor E
(Pfifferling; PFI) GI:20514267 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor E,
GI:20514266
Length = 531
Score = 29.5 bits (63), Expect = 8.0
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 445 LLPNHMLLSLSENLPRELQGVNACCDPMPPFVKQNVITIHRMILSCRELPKDAQIFHIPS 504
+LPN LL L+ NL + + + A C+ +P N LSC L D +
Sbjct: 158 ILPNLKLLDLTGNLISDWEEIGALCEQLPALTTLN--------LSCNSLSSDIKSLPQLK 209
Query: 505 GIRNMM--NAGIEQIHYEM 521
IR ++ N+G+ E+
Sbjct: 210 NIRVLVLNNSGLSWTQVEI 228
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,031,167
Number of Sequences: 28952
Number of extensions: 687766
Number of successful extensions: 2254
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2227
Number of HSP's gapped (non-prelim): 42
length of query: 709
length of database: 12,070,560
effective HSP length: 86
effective length of query: 623
effective length of database: 9,580,688
effective search space: 5968768624
effective search space used: 5968768624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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