GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000625-TA|BGIBMGA000625-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0086 + 19914234-19914382,19914590-19914653,19914793-199148...    29   2.3  
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    27   9.1  
04_04_0634 - 26777889-26778452,26778526-26778797,26778905-267791...    27   9.1  
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548...    27   9.1  

>11_06_0086 +
          19914234-19914382,19914590-19914653,19914793-19914882,
          19915000-19915056,19915147-19915195,19915393-19915469,
          19915686-19915725,19915813-19915907,19916007-19916171,
          19916317-19916427,19916515-19916602,19916691-19916757,
          19916822-19916939,19917022-19917139,19917398-19917643,
          19917736-19917833,19917961-19918143,19918237-19918356,
          19918515-19918565
          Length = 661

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 8  YKGEEKLTLQEECLVPGWHFFYKGDKIYPSHKFLLQRNV 46
          Y  +  + L E+ L P W FF    K YP +K L QR V
Sbjct: 30 YSKDGLMKLPEDILSP-WDFFSGAVKQYPKNKMLGQRKV 67


>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 151 WSMLQKSVYED-INNEEYDYIPEMYDKIYGDS 181
           W +LQK V  D +NNE   Y+ +   KI  D+
Sbjct: 685 WELLQKHVLSDYVNNENATYLVDWQRKIILDN 716


>04_04_0634 -
           26777889-26778452,26778526-26778797,26778905-26779117,
           26779497-26779578
          Length = 376

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 5   DIDYKGEEKLTLQEECLVPG-----WHFFYKGDKIYPS 37
           DID    E   LQE+C +       W+FF   DK YP+
Sbjct: 86  DIDLYKIEPWDLQEQCKIGNEEQNEWYFFSHKDKKYPT 123


>04_04_0605 +
           26549904-26551939,26553931-26554180,26554764-26554829,
           26555194-26555388,26555830-26556141,26556537-26556595,
           26557138-26557381,26557466-26557528,26557997-26558386
          Length = 1204

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 87  CVRDGMYGAPLICKGRMVAMLMAPDAQWTNCTGFSNVMHLLSSAYLKKYMSCVSSLFE 144
           C+    YGA L+ +  +  +L++   +  N +    ++   +S  L+K    + SL E
Sbjct: 811 CITTNYYGAKLVTEALLPLLLLSSSGRIVNVSSGFGLLRNFNSEDLRKEFDDIDSLTE 868


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,407,503
Number of Sequences: 37544
Number of extensions: 203342
Number of successful extensions: 363
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 4
length of query: 185
length of database: 14,793,348
effective HSP length: 78
effective length of query: 107
effective length of database: 11,864,916
effective search space: 1269546012
effective search space used: 1269546012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)