GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000625-TA|BGIBMGA000625-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (185 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    30   0.87 
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    30   1.2  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    30   1.2  
Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   4.6  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   4.6  
Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 117 CTGFSNVMHLLSSAYLKKYMSCVS--SLFEMDTRVDWSMLQKSVYEDINNEEYDYIP 171
           C+ FS  +HLLSS  + +YM+CV+  S    D  V     +  +   +     DY+P
Sbjct: 816 CSQFSEALHLLSS--MVQYMACVTPESFVWNDLSVQQEERRHRILPQLCGSPLDYLP 870


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 93   YGAPLICKGRMVAMLMAPDAQ--WTNCTGFS-NVMHLLSSAYLKKYMSCVSSLFEMDTRV 149
            Y  PL+ +   +  ++ PD++  +   TG S +++  ++S  +KK++S    +  +   V
Sbjct: 1738 YVIPLVPQ-LQIKNVLDPDSESRYPQITGESVSMLSQMASEPVKKHVSREDEMKLLPPSV 1796

Query: 150  DWSMLQKSVYEDINNEEYDYIPEMYDKIYGDSSS 183
            D+  L+K V E + +  +  +    D I GD+++
Sbjct: 1797 DFEALKKHVMESLQSATHHAVMNCRDLIGGDNTN 1830


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 93   YGAPLICKGRMVAMLMAPDAQ--WTNCTGFS-NVMHLLSSAYLKKYMSCVSSLFEMDTRV 149
            Y  PL+ +   +  ++ PD++  +   TG S +++  ++S  +KK++S    +  +   V
Sbjct: 1859 YVIPLVPQ-LQIKNVLDPDSESRYPQITGESVSMLSQMASEPVKKHVSREDEMKLLPPSV 1917

Query: 150  DWSMLQKSVYEDINNEEYDYIPEMYDKIYGDSSS 183
            D+  L+K V E + +  +  +    D I GD+++
Sbjct: 1918 DFEALKKHVMESLQSATHHAVMNCRDLIGGDNTN 1951


>Z68314-10|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 9/33 (27%)

Query: 115  TNCT-GFSNVMHLLSSAYLKKYMSCVSSLFEMD 146
            TNCT GFS + H        +Y+SC S LFE D
Sbjct: 1602 TNCTCGFSAIRH--------RYLSCCSGLFEED 1626


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 9/33 (27%)

Query: 115  TNCT-GFSNVMHLLSSAYLKKYMSCVSSLFEMD 146
            TNCT GFS + H        +Y+SC S LFE D
Sbjct: 1602 TNCTCGFSAIRH--------RYLSCCSGLFEED 1626


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 9/33 (27%)

Query: 115  TNCT-GFSNVMHLLSSAYLKKYMSCVSSLFEMD 146
            TNCT GFS + H        +Y+SC S LFE D
Sbjct: 1602 TNCTCGFSAIRH--------RYLSCCSGLFEED 1626


>Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical
           protein H21P03.2 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 141 SLFEMDTRVDWSMLQKSVYED--INNEEYDYIPEMYDKIYGDSSSSE 185
           +L +++T V    + KS + D  I ++  D I EMYD +Y D+  SE
Sbjct: 138 ALKQIETSVKAHTVDKSNWCDEWIVDDNMDEINEMYDDMYKDARLSE 184


>Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical
           protein C49C3.11 protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 58  EWCETLTIKFQKALNNLGFLGYFDKTACI 86
           E+C  L +    AL N    G+FD   C+
Sbjct: 329 EYCVQLQVTVDPALANKNLTGFFDNRVCV 357


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,878,733
Number of Sequences: 27539
Number of extensions: 194172
Number of successful extensions: 441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 8
length of query: 185
length of database: 12,573,161
effective HSP length: 77
effective length of query: 108
effective length of database: 10,452,658
effective search space: 1128887064
effective search space used: 1128887064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)