GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000625-TA|BGIBMGA000625-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (185 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37560.1 68418.m04523 zinc finger protein-related contains we...    30   1.1  
At1g26930.1 68414.m03283 kelch repeat-containing F-box family pr...    29   2.5  
At5g45490.1 68418.m05588 disease resistance protein-related cont...    28   3.3  
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR...    28   4.4  
At1g11580.1 68414.m01329 pectin methylesterase, putative similar...    28   4.4  

>At5g37560.1 68418.m04523 zinc finger protein-related contains weak
           similarity to zinc fingers and Pfam:PF01485 IBR domain
          Length = 408

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 103 MVAMLMAPDAQWTNCTGFSNVMHLLSSAYLKKYMSCVSSLFEMDTRVDWSMLQKSVYEDI 162
           M+  ++A D  W  C+   +++ L        +++C   L  MD R D       V  ++
Sbjct: 313 MMLKVLANDQMWRQCSECKHMIELTEGC---NHITCSCQL--MDNREDEEDYNLHVDAEV 367

Query: 163 NNEEYDYIPEMYDKIYGDSSSSE 185
           NN++ D    ++D+ Y +    +
Sbjct: 368 NNDDDDDEDYVFDEDYEEDDDDD 390


>At1g26930.1 68414.m03283 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 421

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 137 SC-VSSLFEMDTRVD--WSMLQKSVYEDINNEEYD-YIPEMYDKIYGDSSSSE 185
           SC VS+LF M +  +  WS L       +NN+E D +  +MY K+  DSS  E
Sbjct: 9   SCLVSTLFTMPSHKETKWSFLVSGKRSFLNNDESDLHFKKMY-KLTTDSSEGE 60


>At5g45490.1 68418.m05588 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 354

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 11  EEKLTLQEECLVPGWHFFYKGDKIYPSHKFLLQRNVRVQFMNIVKKSEWCETLTIKFQKA 70
           EE+  L+ E  +PG       ++I     FLL + VR +F ++V   E+    T   QK 
Sbjct: 45  EEEERLKTESKLPGHDIHGFDNEIKSLQHFLLDQKVRREFKSLVIVGEYGVGKTALCQKI 104

Query: 71  LNN 73
            N+
Sbjct: 105 FND 107


>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1261

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 7    DYKGEEKLTLQEECLVPGW--HFFYKGDKIYPSHKFL 41
            ++K E+K   Q  C++ GW  H  Y+  +I   H F+
Sbjct: 1056 EFKKEDKTLFQFSCILGGWTEHGSYEAREIKSDHVFI 1092


>At1g11580.1 68414.m01329 pectin methylesterase, putative similar to
           pectin methylesterase GI:1617583 from [Lycopersicon
           esculentum]
          Length = 557

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 98  ICKGRMVAMLMAPDAQWTNCTGFSNVMHLLSSAYLKKYMSCVSSLFEMDTRVDWSMLQKS 157
           + K RM++ +        N   +SNV H   S+ L  YM+C+ S+   D  V+   + K 
Sbjct: 132 VSKDRMMSSMEELRGGNYNLESYSNV-HTWLSSVLTNYMTCLESI--SDVSVNSKQIVKP 188

Query: 158 VYEDI 162
             ED+
Sbjct: 189 QLEDL 193


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,624,093
Number of Sequences: 28952
Number of extensions: 180022
Number of successful extensions: 378
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 5
length of query: 185
length of database: 12,070,560
effective HSP length: 77
effective length of query: 108
effective length of database: 9,841,256
effective search space: 1062855648
effective search space used: 1062855648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)