GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000624-TA|BGIBMGA000624-PA|IPR001452|Src homology-3,
IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin subtype 2,
IPR003961|Fibronectin, type III, IPR003962|Fibronectin, type III
subdomain, IPR007110|Immunoglobulin-like, IPR013098|Immunoglobulin
I-set, IPR008957|Fibronectin, type III-like fold
         (2130 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             39   0.002
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    27   4.0  
AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    27   5.3  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    27   7.0  
AY341186-1|AAR13750.1|  189|Anopheles gambiae GNBP A1 protein.         26   9.2  
AY341185-1|AAR13749.1|  189|Anopheles gambiae GNBP A1 protein.         26   9.2  
AY341184-1|AAR13748.1|  187|Anopheles gambiae GNBP A1 protein.         26   9.2  
AY341183-1|AAR13747.1|  189|Anopheles gambiae GNBP A1 protein.         26   9.2  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   9.2  

>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 61/247 (24%), Positives = 91/247 (36%), Gaps = 25/247 (10%)

Query: 1825 RIQKLSINTTYQFRIYARNEIGTSLPYTSDDKITIGKTLTPPSQPRNFVVSESTSRSVTL 1884
            RI  L     Y+FR+   N IG         +   G   +P   P    V   T   V +
Sbjct: 74   RINNLERGVEYEFRVAGMNHIGIGQEAVKHLQTPEG---SPTGPPTGIAVRFQTPDVVCI 130

Query: 1885 KWTEP-ESNGGSPITNYIIEF-KTVKGKSWTKIVTVGGSVHEHCIENIKEKDEIIFRISA 1942
             W  P   +    IT Y ++F K +     T+  T   +V +    N+ E  E I R+ A
Sbjct: 131  TWEPPTREHRNGQITRYDVQFHKKIDHGLGTERNT---TVRKAVFTNLDESTEYIVRVRA 187

Query: 1943 ENTVGVSLPTESQSVRLEKHATVPSPPTAPLEIRMVG-SNIVMTSWGTPEWDGGAPLLGY 2001
                G    +E   +     AT      AP  ++ V  S   +  W  P    G  L+GY
Sbjct: 188  YTKQGAGPFSEKVVI-----ATERDMGRAPFSVQAVATSEQTVEVWWEPVPSRG-KLVGY 241

Query: 2002 NI-----AIRDVTKTMWMEVGKVDVNTLKFNIRDLSENHTYMIRIYARNEIGLSEPLESD 2056
             I     A+ D+ +     VG  +   L  N+   ++   Y + I A  + GL + L   
Sbjct: 242  KIFYTMTAVEDLDEWQTKVVGVTESADL-INLEKFAQ---YAVAIAAMYKTGLGK-LSEK 296

Query: 2057 EPFKVIP 2063
               KV P
Sbjct: 297  ATVKVKP 303



 Score = 34.3 bits (75), Expect = 0.035
 Identities = 60/270 (22%), Positives = 100/270 (37%), Gaps = 24/270 (8%)

Query: 1728 IQKLNENCEYMFRVIAQNPVGFSEALESEPIVIKTALDVPSXXXXXXXXXXIDNESVYIT 1787
            I  L    EY FRV   N +G  +        ++T    P+             + V IT
Sbjct: 75   INNLERGVEYEFRVAGMNHIGIGQEAVKH---LQTPEGSPTGPPTGIAVRFQTPDVVCIT 131

Query: 1788 WF-PSEKNGGSPIIDYKVEI-KQEGKKWKXXXXXXXXXARIQKLSINTTYQFRIYARNEI 1845
            W  P+ ++    I  Y V+  K+               A    L  +T Y  R+ A  + 
Sbjct: 132  WEPPTREHRNGQITRYDVQFHKKIDHGLGTERNTTVRKAVFTNLDESTEYIVRVRAYTKQ 191

Query: 1846 GTSLPYTSDDKITIGKTLTPPSQPRNFVVSESTSRSVTLKWTEPESNGGSPITNYIIEFK 1905
            G   P++  +K+ I         P + V + +TS      W EP  + G  +   I    
Sbjct: 192  GAG-PFS--EKVVIATERDMGRAPFS-VQAVATSEQTVEVWWEPVPSRGKLVGYKIFYTM 247

Query: 1906 TVKG--KSW-TKIVTVGGSVHEHCIENIKEKDEIIFRISAENTVGVSLPTESQSVRLEKH 1962
            T       W TK+V V  S     + N+++  +    I+A    G+   +E  +V+++  
Sbjct: 248  TAVEDLDEWQTKVVGVTESAD---LINLEKFAQYAVAIAAMYKTGLGKLSEKATVKVK-- 302

Query: 1963 ATVPSPPTAPLEIRM--VGSNIVMTSWGTP 1990
                 P   PL +R   V ++ +  SW  P
Sbjct: 303  -----PEDVPLNLRAHDVSTHSMTLSWAPP 327


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 889 ELVITNVDSEIDSGDYKCVASNSAGKSSHGARVTI 923
           E++ITNVD   + GD +    N  G +S  A + +
Sbjct: 323 EVIITNVDPLANDGDIRSAIGNVTGSASSIATIQL 357


>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
            protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 1572 VITISNEDIKQKHKVGDEWLVTAVIEGIPPPEVIWYKNGNKLENDKEYNITTKEKTSVIR 1631
            VITI    I+  H + +  + T +I GIP   ++    G+   N  E   T     S IR
Sbjct: 122  VITIGEHTIRLPHNISNLTVNTYLINGIPENYMMLADTGSATINANE---TYTPLLSAIR 178

Query: 1632 IKELKRSHSSKYTIEASNT 1650
            +   K   SS ++ + S T
Sbjct: 179  L--FKNFFSSLFSKQGSQT 195


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 774 PVKALPTKSDGDTH--SITILKPKKVKD--EGVYTLKAENSEGIAETSAVITVEEPTEE 828
           P  + P  SD  T   S + ++P+++     G+ T KA   +GI   +  + +EE TEE
Sbjct: 468 PPVSWPVSSDAPTTVPSDSRVEPQELLSIAAGMVTRKAPGLDGIPNAAVKVAIEEYTEE 526


>AY341186-1|AAR13750.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 1409 NSTIIYYVVEYQEIDTTEWISVKNITKTQT 1438
            N TIIYY V  Q  +   W++ K  T T+T
Sbjct: 88   NGTIIYYWVYVQFANEGYWLTDKKHTVTRT 117


>AY341185-1|AAR13749.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 1409 NSTIIYYVVEYQEIDTTEWISVKNITKTQT 1438
            N TIIYY V  Q  +   W++ K  T T+T
Sbjct: 88   NGTIIYYWVYVQFANEGYWLTDKKHTVTRT 117


>AY341184-1|AAR13748.1|  187|Anopheles gambiae GNBP A1 protein.
          Length = 187

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 1409 NSTIIYYVVEYQEIDTTEWISVKNITKTQT 1438
            N TIIYY V  Q  +   W++ K  T T+T
Sbjct: 88   NGTIIYYWVYVQFANEGYWLTDKKHTVTRT 117


>AY341183-1|AAR13747.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 1409 NSTIIYYVVEYQEIDTTEWISVKNITKTQT 1438
            N TIIYY V  Q  +   W++ K  T T+T
Sbjct: 88   NGTIIYYWVYVQFANEGYWLTDKKHTVTRT 117


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 1232 KKSVIEDTEKFTLISDVKKRTLIIRKCTEDDQCEY 1266
            +K+ +E  E F L S   K   + +KCTE+ + +Y
Sbjct: 227  RKAWLEYEELFLLYSATLKDLKLAKKCTEEKEQQY 261


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.312    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,228
Number of Sequences: 2123
Number of extensions: 84622
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 14
length of query: 2130
length of database: 516,269
effective HSP length: 75
effective length of query: 2055
effective length of database: 357,044
effective search space: 733725420
effective search space used: 733725420
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)