Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000622-TA|BGIBMGA000622-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2, IPR000577|Carbohydrate
kinase, FGGY, IPR007110|Immunoglobulin-like, IPR013098|Immunoglobulin
I-set, IPR010939|Protein of unknown function DUF1136
(4814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0932 - 7363147-7363478,7364336-7364423,7364515-7364604,736... 38 0.15
09_06_0095 + 20833313-20835073 38 0.27
08_02_0018 - 11267949-11268095,11268171-11268260,11269180-112692... 36 0.81
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495 36 0.81
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 36 1.1
02_02_0109 + 6830802-6833412,6833491-6833861 35 1.4
02_02_0106 + 6814391-6817007,6817086-6817462 35 1.4
01_05_0090 + 18038219-18038421,18039365-18039488,18040229-180403... 35 1.4
05_07_0326 + 29274287-29274428,29274577-29275379 35 1.9
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 35 1.9
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 34 2.5
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 34 3.3
02_01_0645 + 4820461-4820736,4821034-4821086,4821670-4821876,482... 34 3.3
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 34 3.3
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 33 4.3
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 33 4.3
02_05_1268 - 35345283-35345462,35345577-35345636,35345719-353460... 33 5.7
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 33 5.7
01_03_0182 + 13537522-13539699 33 5.7
07_01_0247 + 1813979-1814207,1815293-1815351,1815725-1815802,181... 33 7.6
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 33 7.6
03_02_0536 - 9284079-9286034 33 7.6
>01_01_0932 - 7363147-7363478,7364336-7364423,7364515-7364604,
7364709-7364813
Length = 204
Score = 38.3 bits (85), Expect = 0.15
Identities = 36/181 (19%), Positives = 80/181 (44%), Gaps = 7/181 (3%)
Query: 4230 ELEKTFEERQVLQRQGVIDHRPELKPKVIKEPETEWQQSVKRKKNEEYYNKLQELENEQV 4289
E K+F + ++ + + D + EL+PKV++ E+ + K+++ +K+++ N
Sbjct: 28 EFLKSFNKEEIGKE--IDDKKTELEPKVVEVVESSPPEIKALLKDKKTASKIKK--NGPA 83
Query: 4290 IKESRLRESTHQYAIPGDKVTSNTVAKSMAQRYEDNLDQTEEVTEQRVQKKVTQKPRIPD 4349
+ ++ E + PG K S+ VAKS + E V K+ KP
Sbjct: 84 V--TKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFVPKE-EPKPEPEA 140
Query: 4350 PSESTVHGKEVHVAKQKQTQKEVVGDKEITRKITSTETTEIEHKAQTQERVVEGPVKPSK 4409
+ + +EV V ++K+ ++ + + +TE+ + + +E+ E ++
Sbjct: 141 EAAAETTSREVAVEEEKKEEEAAPAEPAAAAAEAAAPSTEVVEEKKEEEKPAEAAAPAAE 200
Query: 4410 P 4410
P
Sbjct: 201 P 201
>09_06_0095 + 20833313-20835073
Length = 586
Score = 37.5 bits (83), Expect = 0.27
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 4246 VIDHRPELKPKVIKEPETEWQQSVKRKKNEEYYNKLQELENEQVIKESRLRE--STH--Q 4301
++DH+ ELK + KE E W ++ K + L+E +Q IK S RE S H +
Sbjct: 319 ILDHKRELKVQARKEAEKFWIEAAATAKKAQALQDLEERYKQQFIKPSYDREDISEHMQE 378
Query: 4302 YAIPGDKVTSNTVAKSMAQRYEDNLDQTEEVTEQRVQKK 4340
Y + K+T + Y++N++ + +Q K
Sbjct: 379 YFLRERKITDKAYLE-----YKNNVEDKFAIRNHEMQLK 412
>08_02_0018 - 11267949-11268095,11268171-11268260,11269180-11269298,
11269386-11269488,11269595-11269691,11269800-11269863,
11269955-11270087,11270176-11270423,11270527-11270685,
11271396-11271570
Length = 444
Score = 35.9 bits (79), Expect = 0.81
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 3067 HYEASLIPTGDQSMVI-EWFYNGKTIEASHRIRTVYAFGMVVLE-ILGTKTTDS-GTYSC 3123
H +A L P+G V E+ +G+ E S VYAFG+V+LE +LG K + G C
Sbjct: 305 HNKADLKPSGTVGYVAPEYLLDGQLTEKSD----VYAFGVVLLELLLGRKPVEKIGDSHC 360
Query: 3124 RATNKWGQAEIS 3135
++ W +IS
Sbjct: 361 QSIVSWAIPQIS 372
>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
Length = 728
Score = 35.9 bits (79), Expect = 0.81
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 715 SATGVAETKAVLHVTPRATIERTSQHPETLQYIQQLEDYSKYQHQESIEEQTSQRPQFIR 774
SA+ VA ++A+ + R E+ S H E LQY++ +E+ + + QE+IE + +
Sbjct: 481 SASAVAASEAMAMIN-RLQEEKASMHMEALQYLRMMEEQADHD-QEAIERLNDLLTEREK 538
Query: 775 PLQDL-GELQEGRNAH 789
+ DL EL R H
Sbjct: 539 EMLDLEAELDNYRRLH 554
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 35.5 bits (78), Expect = 1.1
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 4246 VIDHRPELKPKVIKEPETEWQQSVKRKKNEEYYNKLQELENEQVIKESRLRESTHQYAIP 4305
++DH+ ELK + KE E W + +K + ++E +Q IK R+ ++ I
Sbjct: 318 ILDHKGELKVQARKEAEKFWIEEAATEKKTQALQDMEERFKQQFIKLGYARKGIPEH-IQ 376
Query: 4306 GDKVTSNTVAKSMAQRYEDNLDQTEEVTEQRVQKKV 4341
+T + + ++ +++++ E+ +Q K+
Sbjct: 377 EYYLTDCKLHEDTLLKFRNDVEEKFEMRNHEMQLKI 412
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 35.1 bits (77), Expect = 1.4
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 3088 GKTIEASHRIRTVYAFGMVVLEIL-GTKTTDSGTYSCRATNKWGQ-AEISVKLECVDK 3143
G ++ + +I VY+FG+V+LEI+ G D G Y C A W Q E + ++ +D+
Sbjct: 873 GHRLKVNEKI-DVYSFGVVLLEIITGRVANDGGEYYCLAQWAWRQYQEYGLSVDLLDE 929
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 35.1 bits (77), Expect = 1.4
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 3088 GKTIEASHRIRTVYAFGMVVLEIL-GTKTTDSGTYSCRATNKWGQ-AEISVKLECVDK 3143
G ++ + +I VY+FG+V+LEI+ G D G Y C A W Q E + ++ +D+
Sbjct: 875 GHRLKVNEKI-DVYSFGVVLLEIITGRVANDGGEYYCLAQWAWRQYQEYGLSVDLLDE 931
>01_05_0090 + 18038219-18038421,18039365-18039488,18040229-18040311,
18040401-18040473,18040584-18040688,18040803-18040853,
18041705-18041781,18041879-18042037,18043548-18043692,
18043776-18043884,18043959-18044107,18044175-18044258,
18044784-18044825,18045811-18046014
Length = 535
Score = 35.1 bits (77), Expect = 1.4
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 4282 QELENEQVIKESRLRESTHQYAIPGD---KVTSNTVAKSMAQRYEDNLDQTEEVTEQRVQ 4338
+ LE Q + S L+ TH +A+ GD K S T+ A+ YED + +E+ + ++
Sbjct: 353 KRLEGLQPCEVSALKSGTHIFAVYGDNFFKPASYTIEAMCAKSYEDTTQRLKEIESKILE 412
Query: 4339 KK 4340
K+
Sbjct: 413 KR 414
>05_07_0326 + 29274287-29274428,29274577-29275379
Length = 314
Score = 34.7 bits (76), Expect = 1.9
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 4211 KNAPRPWYDETTQYQRTETELEKTFEERQVLQRQGVIDHRPELKPKVIKEPETEWQQSVK 4270
K P+P +DE ++ + E E EE ++Q + + K K +E E + K
Sbjct: 136 KQEPQPQFDEAPNKKKQQQEEE---EEAAKKKQQQLQEEEEATKKKQQEEEEEAAAKKTK 192
Query: 4271 RKKNEEYYNKLQELENEQVIKESRLRESTHQYAIPGDKVTSNTVAKSMAQRYEDNLDQTE 4330
+ + EE K E + E T +PG V ++A+ + +R E+ +
Sbjct: 193 KLQEEEAIAK----HKPATTTERKQAEPTTAAPLPGHVVDRESLAEKVKRRAEEECAKAA 248
Query: 4331 EVTEQR 4336
E++
Sbjct: 249 AAAEEK 254
>01_06_1446 - 37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 34.7 bits (76), Expect = 1.9
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 4237 ERQVLQRQGVIDHRP--ELK-PKVIKEPETEWQQSVKRKKNEEYYN----KLQELENEQV 4289
ERQ + +D RP E+K PK+IK+ T ++ K ++N KL N +
Sbjct: 364 ERQDSSKSIHVDQRPRNEIKQPKIIKKILTTLREESKLRQNNSPIRASRVKLNSPSNREQ 423
Query: 4290 IKESRLRESTHQYAIPGDKVTSNTVAKSMAQ-----RYEDNLDQTEEVTEQRVQKKVTQ- 4343
+ + S + +VTS AK + + + L + E + K+ Q
Sbjct: 424 LSDDSKHSSDISSSSKSSEVTSRESAKVICEPVKRAQASPPLKHLSPIVEHSPKAKIKQD 483
Query: 4344 KPRIPDPSESTVHGKEVHVAKQK 4366
+P PDP++ + + V K K
Sbjct: 484 EPLQPDPAKQAMEDVDAAVGKVK 506
>03_05_0175 + 21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 34.3 bits (75), Expect = 2.5
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 4259 KEPETEWQQSVKRKKNEEYYNKLQELENEQVIKESRLRESTHQYAIPGDKVTSNTVAKSM 4318
+E T W S + +K EE +E+E E+V +E + E + I ++ + +
Sbjct: 37 REGWTRWTASDEEEKEEEE----EEVEEEEVEEEEEIEEEEVEEEIEEEEEEIEEEEEEV 92
Query: 4319 AQRYEDNLDQTEEVTEQRVQKKVTQKPRIPDPSESTVHGKEVHVAKQKQTQKEVVGDKE 4377
+ ++ ++ +E EQ+ + QK + D ES+ V ++ + +KE++ K+
Sbjct: 93 REEVQEAGEEVDE--EQQGANEEMQKSK-EDADESSKSAIPVQKQEEDEAEKEIIEAKD 148
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 33.9 bits (74), Expect = 3.3
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 4307 DKVTSNTVAKSMAQRYEDNLDQTEEVTEQRVQKKVTQKPRIPDPSESTVHGKEVHVAKQK 4366
+KV A+ +A+ D++ + E + +K+ T + +E + EV V +
Sbjct: 884 EKVEDKGTAEVLARETGDSITAPGALDE-KTEKEATAEALADKTTEGEITA-EVQVEETT 941
Query: 4367 QTQKEVVGDKEITRKITSTETTEIEHKAQT--QERVVE 4402
T+K +V DKE+ + T ETT A+T E++VE
Sbjct: 942 TTEK-IVEDKELAEETTEGETTAEVQVAETTSTEKIVE 978
>02_01_0645 + 4820461-4820736,4821034-4821086,4821670-4821876,
4821975-4822055,4822137-4822302
Length = 260
Score = 33.9 bits (74), Expect = 3.3
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 4259 KEPETEW-QQSVKRKKNEEYYNKLQELENEQVIKESRLRESTHQYAIPGDKVTSNTVAKS 4317
KE W Q+ K +++ ++++ + +Q + ES + +PG T+ +
Sbjct: 116 KERRRRWAQRRTSSKPDKKEPLEVEDKDIKQKAENEEDEESEETHTMPGMLPTNVIEMLA 175
Query: 4318 MAQRYEDNLDQTEEVTEQRVQKKVTQKPRIPDPSESTVHGKEV 4360
++ + D EE+T Q+VQK+ K R+ T+ K+V
Sbjct: 176 AREKQTFSSDSEEEITNQKVQKR---KKRLKSSGPETILLKDV 215
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 33.9 bits (74), Expect = 3.3
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 4266 QQSVKRKKNEEYYNKLQELENEQVIKESRLRESTHQYAIPGDKVTSNTVAKSMAQRYEDN 4325
Q SV +K NEE L+NE + + + E+ G+K+ S Q +N
Sbjct: 755 QISVMQKNNEELELANSNLQNELAMVQEQKNEAVASTVELGNKLEEQNQQISNLQEAVEN 814
Query: 4326 LD--QTEEVTEQRV-QKKVTQKPRIPDPSESTVHGKEVHVAKQKQTQKEVV--GDKEITR 4380
L+ +T+ E V Q++ E+ + E + +QKQ+Q + ++E+
Sbjct: 815 LEAAKTDMYNELTVCQEEKNAALLQVQQLEANLKNLESEL-EQKQSQVSALEQANEELRE 873
Query: 4381 KITSTETTEIEHKAQTQERVVE 4402
KI+S E E +++ Q+ +++
Sbjct: 874 KISSLERQLEEARSKLQDEIIK 895
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 33.5 bits (73), Expect = 4.3
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 827 YVSLNIMHLRAEDAGSYTVRAVN--KLGEAISTASIRVAARSTVTADLGIPE 876
YVS+++M E AG +V A+N LG + + + A S TA LG+PE
Sbjct: 86 YVSIDVMTNTLEAAGKPSVAAINGPALGGGLEISMVCQARISIPTAQLGLPE 137
>02_05_0568 - 30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 33.5 bits (73), Expect = 4.3
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 4348 PDPSESTVHGKEVHVAKQKQTQKEVVG-DKEITRKITSTETTEIEHKAQTQERVVEGPVK 4406
P SE+T G++ +++ +T EVVG + + T + + K+ T ++ E K
Sbjct: 526 PPTSETTGLGRDPSISRVHETPLEVVGAESSMPTSFTDSYSVGSPSKSSTVDQQSELDPK 585
Query: 4407 PSKPPI 4412
PS PP+
Sbjct: 586 PSAPPL 591
>02_05_1268 - 35345283-35345462,35345577-35345636,35345719-35346042,
35346266-35346349,35346784-35346872,35346959-35347073,
35347534-35347660,35347743-35347882,35348010-35348071,
35348769-35348838,35348947-35349066,35349155-35349232,
35349738-35349968,35350110-35350220
Length = 596
Score = 33.1 bits (72), Expect = 5.7
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 3932 QVPRGMKRSEALTQMEATIKKYTSEVYLTEDDLYDVDKKQPPRFVTQIQSQTSLVEMETT 3991
Q P + ++T A I + + DDL DV + QP QI ++ + E
Sbjct: 427 QSPAAAAAAASVTAAYAVITDEKTRDIVATDDL-DVKRVQPSGSSKQITTELDALNGEKG 485
Query: 3992 KFECQLAPVGDPNMKVE 4008
K E +LA V D N K++
Sbjct: 486 KLESRLAEVRDENSKLK 502
>02_05_0484 - 29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 33.1 bits (72), Expect = 5.7
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 4230 ELEKTFEERQVLQRQGVIDHRPELKPKV-IKEPETEWQQSVKRKKNEEYYNKLQELENE- 4287
ELE E++Q + + + + EL K+ E E + + K ++ + ++L+ E
Sbjct: 604 ELEMEMEKKQASKERELEEKENELNRKMDFVENELKRAAELNESKIQKILLEKKQLQKEK 663
Query: 4288 QVIKESRLRESTHQYAIPGDKVTSNTVAKSMAQRYE 4323
+V+ E R + T + I D + NT++KS+ +R E
Sbjct: 664 EVLVEDRQKLETDKADIRRDIDSLNTLSKSLKERRE 699
>01_03_0182 + 13537522-13539699
Length = 725
Score = 33.1 bits (72), Expect = 5.7
Identities = 16/83 (19%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 4325 NLDQTEEVTEQRVQKKVTQKPRIPDPSESTVHGKEVHVAKQKQTQKEVVGDKEITRKITS 4384
++D +E+ EQ+ K + + + +P E+ + + + + GD+E+ ++
Sbjct: 236 SVDIDQEIVEQKEYKILIKDDEVVEPKENKISTENDEAIQSTGNNTPIEGDEEV--QLEG 293
Query: 4385 TETTEIEHKAQTQERVVEGPVKP 4407
E + KA+ ++ ++E +KP
Sbjct: 294 DEISIENRKAELEKIIIETIIKP 316
>07_01_0247 + 1813979-1814207,1815293-1815351,1815725-1815802,
1816369-1816536,1816664-1817578
Length = 482
Score = 32.7 bits (71), Expect = 7.6
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 4251 PELKPKV---IKEPETEWQQSVKRKKNEEYYNKLQELENEQVIKESRLRESTHQYAIPGD 4307
P +KP V + E E + +K K ++L +LENE+ K+ + ES ++ +
Sbjct: 185 PSVKPVVDAFVSEAEPFADEQLKAKLTS-MQSELVQLENEEEEKDKKTEESIQRFKEAQE 243
Query: 4308 KVTSNTVAKSMAQRYED-NLDQTEEVTEQRVQKKVTQKPRIP 4348
+ +AK + R ED + D E+ + + + K R+P
Sbjct: 244 ESLGMGMAKHLFSRLEDLSHDDMRELLDVLLPLQQDFKKRLP 285
>05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 32.7 bits (71), Expect = 7.6
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 4237 ERQVLQRQGVID--HRPELKPKVIKEPETEWQQSVKRK-KNEEYYNKLQELENEQ---VI 4290
E +V +GV+ ++PK K+ T + +RK K EE + + EL E+ V
Sbjct: 24 EGEVEAEEGVVSSSRSKRVRPKRPKKVMTPMEAVERRKLKREEQFRREVELRREERRKVK 83
Query: 4291 KESRLRESTHQYAIPGDKVTSNTVAKSMAQRYEDNLDQTEE-VTEQRVQKKVTQKPRIPD 4349
KE R + G+ A+ + +E + EE E++V KV +K R P
Sbjct: 84 KEKRRIRRLMETEAAGE--VGEAAAEEEEEEHEAETEGEEEAAAEEQVPAKVVEK-RKPK 140
Query: 4350 PSESTVHGKEVHVA 4363
+ K++ VA
Sbjct: 141 SEPKVKNQKQLQVA 154
>03_02_0536 - 9284079-9286034
Length = 651
Score = 32.7 bits (71), Expect = 7.6
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 2052 CKATNAVGEAVTTSSVKVDAKSGLYLDTLDE---QRLKKIQELEKYERPKPIEEEQPGQR 2108
CK T G A ++ +V + L+TL+E R K+ + + P+P++EE+P
Sbjct: 325 CKET---GVARSSEYPEVQRVTDKLLETLEEFMRDRAKRPKSPPREPEPEPVKEEEPEPD 381
Query: 2109 PVFLTALTSLENLKEGDRAHFECRVEPINDP 2139
+ AL + E+ KE + E V+P P
Sbjct: 382 MNEIKALPAPEDYKEPEPEKVEEEVKPEPPP 412
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,769,080
Number of Sequences: 37544
Number of extensions: 6173001
Number of successful extensions: 14366
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 14332
Number of HSP's gapped (non-prelim): 59
length of query: 4814
length of database: 14,793,348
effective HSP length: 98
effective length of query: 4716
effective length of database: 11,114,036
effective search space: 52413793776
effective search space used: 52413793776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 71 (32.7 bits)
- SilkBase 1999-2023 -