GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000621-TA|BGIBMGA000621-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002654|Glycosyl transferase, family
25
         (402 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    23   2.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   5.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   6.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   9.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   9.0  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    22   9.0  

>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 303 LYSYWTLGYLISER 316
           +Y YW+ G+LI +R
Sbjct: 320 IYFYWSFGFLIIQR 333


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 223 INLERRQERRFLMELSFKELGMSVQHFSAIDGRNLDMNDLREYSITLMPNYEDPYHKRYI 282
           I+ +R Q  R    L FK     V   + +  R LD+ D++      +P   D Y  R I
Sbjct: 439 IHGDRYQSEREKALLDFKTGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHR-I 497

Query: 283 GR 284
           GR
Sbjct: 498 GR 499


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 41  SGPLHSDESSSTNWSPNHFRHVINMREAALDFGRKLCGMTENYYYKRT 88
           S P  S  SS+ + SP    +    R+  L  G       E+YY ++T
Sbjct: 68  SSPRISSPSSTKSGSPGFLTYTKADRDVDLFRGSSTPESPEHYYNQKT 115


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 77  CGMTENYYYKRTDDYKPI 94
           C  T  +YY+ TD YK I
Sbjct: 273 CLSTRLFYYQLTDLYKKI 290


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 14/38 (36%), Positives = 16/38 (42%)

Query: 169 PLEDNDPLEKDYEQMLNIKLEAISQGTPLPLNHMLEEY 206
           P  DN   E      LN   EA S    LP  H L+E+
Sbjct: 379 PTYDNSRREGKQLNPLNKGTEADSSFVTLPQLHSLDEW 416


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 16  IEIINKWVENYGSEYNGMYVTTN 38
           +  + K++  YGS +   YVT N
Sbjct: 80  VSSVLKFIRKYGSHFIESYVTGN 102


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,254
Number of Sequences: 317
Number of extensions: 5115
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 402
length of database: 114,650
effective HSP length: 58
effective length of query: 344
effective length of database: 96,264
effective search space: 33114816
effective search space used: 33114816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)