GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000621-TA|BGIBMGA000621-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002654|Glycosyl transferase, family
25
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    29   1.5  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    29   1.5  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 317 GAKKLLRADPLSKMLPVDEFLPIMFDQHPNEEW 349
           GA+KL++ + LS++L  D  LP++ D HP   W
Sbjct: 401 GAEKLMKKE-LSRVL--DMVLPLLADPHPRVRW 430


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 2   HIFRIHSDFNEDKSIEIIN 20
           H  R+H+ F +DKS+E+IN
Sbjct: 384 HPLRVHAQFMKDKSLELIN 402


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 85  YKRTDDYKPILNRKKTGCFDVPMVHSAVLISMRYDVSDKLTYYPSK 130
           YK  +DY+ +    K   FD+ +    V +S  Y +   + +  SK
Sbjct: 145 YKSLEDYEQLFGEDKASMFDISVKQDRVFLSEIYALKILVEFLSSK 190


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,152
Number of Sequences: 5004
Number of extensions: 102094
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 3
length of query: 402
length of database: 2,362,478
effective HSP length: 74
effective length of query: 328
effective length of database: 1,992,182
effective search space: 653435696
effective search space used: 653435696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)