GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000621-TA|BGIBMGA000621-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002654|Glycosyl transferase, family
25
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783...    30   3.8  

>07_03_0724 +
           20975942-20976867,20977397-20977476,20977976-20978370,
           20988410-20989444
          Length = 811

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 217 CDEIYMINLERRQERRFLMELSFKELGMSVQHFSAIDGRNLDMNDLREYSITLMPNYE-D 275
           CD I  +++E ++ R+  M     ++G+  Q    +   N+D ND+ E SI  + +Y+ D
Sbjct: 666 CD-IVAVDMEGKKWRKIPMPDPDGDIGIIHQTQGRLCAFNVDPNDILELSIWFLEDYDTD 724

Query: 276 PYHKRYIGRKILLDGEEEY 294
            +  ++    I L G ++Y
Sbjct: 725 NWILKHTVSSINLFGRKKY 743



 Score = 28.7 bits (61), Expect = 8.7
 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 218 DEIYMINLERRQERRFLMELSFKELGMSVQHFSAIDGRNLDMNDLREYSITLMPNYE-DP 276
           DEI  +++E ++ R+  M     ++G+  Q    +   N+D ND+ + SI  + +Y+ D 
Sbjct: 165 DEIVAVDIEGKKWRKIPMPDPDGDIGIIHQTQGRLCAFNVDPNDIFKLSIWFLQDYDTDN 224

Query: 277 YHKRYIGRKILLDGEEEY 294
           +  ++    + L G ++Y
Sbjct: 225 WILKHTVGSMKLFGGKKY 242


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,701,550
Number of Sequences: 37544
Number of extensions: 568105
Number of successful extensions: 988
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 2
length of query: 402
length of database: 14,793,348
effective HSP length: 84
effective length of query: 318
effective length of database: 11,639,652
effective search space: 3701409336
effective search space used: 3701409336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)