Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000621-TA|BGIBMGA000621-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002654|Glycosyl transferase, family
25
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14) 127 1e-29
SB_53853| Best HMM Match : Glyco_transf_25 (HMM E-Value=4.8e-31) 117 2e-26
SB_55344| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 3e-10
SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07) 31 1.3
SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09) 30 3.8
SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.8
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.8
SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.8
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40) 29 8.8
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.8
>SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14)
Length = 594
Score = 127 bits (307), Expect = 1e-29
Identities = 57/120 (47%), Positives = 82/120 (68%), Gaps = 4/120 (3%)
Query: 278 HKRYIGRKIL---LDGEEEYATPHTTRPLYSYWTLGYLISERGAKKLLRADPLSKMLPVD 334
H Y+GR+ + L G E + + Y++WTLGY+I GA+KL+ A PL+KM+ +D
Sbjct: 111 HSNYVGRRRMKTELIGHVE-GSQYINWVNYTWWTLGYMIKLEGARKLVSAKPLTKMMAID 169
Query: 335 EFLPIMFDQHPNEEWKSHFENRDLIALSAAPLLVHPTHYTGQPGYISDTEDSDIVDPDFV 394
EFLPIM+D+HPN EW +HF R+L+A++A PLL++PTHY G GY SDTE + V + +
Sbjct: 170 EFLPIMYDKHPNAEWSAHFSPRNLVAMTAEPLLLYPTHYIGDKGYFSDTETAAFVPEEIL 229
Score = 71.7 bits (168), Expect = 1e-12
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 281 YIGRKILLDGEEEYATPHTTRPL---YSYWTLGYLISERGAKKLLRADPLSKMLPVDEFL 337
Y+GRK+ +D E P+ +R YSYWTLGY+++ GA+KL+ PL +ML +DEFL
Sbjct: 46 YLGRKLFIDDNSELV-PNASRVAFTDYSYWTLGYVLTLLGAQKLVSVRPLERMLALDEFL 104
Query: 338 PIMFDQHPN 346
PIM+++H N
Sbjct: 105 PIMYNKHSN 113
>SB_53853| Best HMM Match : Glyco_transf_25 (HMM E-Value=4.8e-31)
Length = 534
Score = 117 bits (281), Expect = 2e-26
Identities = 73/180 (40%), Positives = 98/180 (54%), Gaps = 18/180 (10%)
Query: 78 GMTENYYYKRTDDYKPILNRKKTGCFDVPMVHSAVLISMRYDVSDKLTYYPSKITNYDGP 137
GM E+ YYKRTD Y ILNR+K G F+VPMVHS L+ +R S +L YYP +Y G
Sbjct: 121 GMDESGYYKRTDQYFTILNREKVGTFEVPMVHSTYLVDLRRRASSELRYYPPH-PDYRGH 179
Query: 138 EDDIIAFALNSKALGIPLYICNEAIYGFVPVPLEDNDPLEKDYEQMLNIKLEAISQGTPL 197
DDI+ FA +++ G+ L+I N+ IYG + +P E + LE Q L+ K
Sbjct: 180 HDDILVFAHSARMAGVKLHIINKHIYGHLILPFEARESLEDMRIQFLDGK---------- 229
Query: 198 PLNHMLEEYVTHPNKWKFGCDEIYMINLERRQERRFLMELSFKELGMSVQHFSAIDGRNL 257
L + V H +IYMINL+RR RR M S ELG+ + A+DG+ L
Sbjct: 230 -LGYYARVCVYH------SVYQIYMINLKRRPLRRRRMMASLAELGIQAKPVDAVDGKAL 282
Score = 71.7 bits (168), Expect = 1e-12
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 281 YIGRKILLDGEEEYATPHTTRPL---YSYWTLGYLISERGAKKLLRADPLSKMLPVDEFL 337
Y+GRK+ +D E P+ +R YSYWTLGY+++ GA+KL+ PL +ML +DEFL
Sbjct: 399 YLGRKLFIDDNSELV-PNASRVAFADYSYWTLGYVLTLLGAQKLVSVRPLERMLALDEFL 457
Query: 338 PIMFDQHPN 346
PIM+++H N
Sbjct: 458 PIMYNKHSN 466
Score = 70.5 bits (165), Expect = 2e-12
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 278 HKRYIGRKIL---LDGEEEYATPHTTRPLYSYWTLGYLISERGAKKLLRADPLSKMLPVD 334
H Y+GR+ + L G E + + Y++WTLGY+I GA+KL+ A PL+KM+ +D
Sbjct: 464 HSNYVGRRRMKTELIGHVE-GSQYINWVNYTWWTLGYMIKLEGARKLVSAKPLTKMMAID 522
Query: 335 EFLPIMFDQHP 345
EFLPIM+D+HP
Sbjct: 523 EFLPIMYDKHP 533
Score = 44.8 bits (101), Expect = 1e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 6 IHSDFNEDKSIEIINKWVENYGSEYNGMYVTTNTSSGPL-HSDESSSTNWSPNHFRHVIN 64
I SD NED + E++ +W N Y+ VT N + P + D +++W+ + HV
Sbjct: 2 ITSDHNEDNTTELLKEWANNAKHLYHR--VTMNFTGSPSNYGDVLEASDWTDERYAHVAY 59
Query: 65 MREAALDFGR 74
+R+ ALD R
Sbjct: 60 LRQLALDTAR 69
>SB_55344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 63.7 bits (148), Expect = 3e-10
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 342 DQHPNEEWKSHFENRDLIALSAAPLLVHPTHYTGQPGYISDTEDSDIVDPDFVHLQSK 399
+ + N EW +HF R+L+A++A PLL++PTHY G GY SDTE + V + Q+K
Sbjct: 26 NNNKNAEWSAHFSPRNLVAMTAEPLLLYPTHYIGDKGYFSDTETAAFVPEEIRDAQAK 83
>SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)
Length = 282
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 208 THPNKWKFGCDEIYMINLERRQERRFLMELSFKELGMSVQHFSAIDGRNLDM 259
+H N+W DEI MI R+Q+ +FL E+ ++++ + +F G +LD+
Sbjct: 9 SHCNQWMLDVDEI-MIG--RQQDLQFLTEVEYQKVHIFYSNFMQSLGEHLDL 57
>SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)
Length = 481
Score = 29.9 bits (64), Expect = 3.8
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 346 NEEWKSHFENRDLIALSAAPLLVHPTHYTGQPGYISDTEDSDIVDPDFVHLQS 398
N+E F N + +A S + P+ + PG ISD ED D P H+Q+
Sbjct: 278 NDESSDSFCNYNSLAHSPSISNTSPSLESPVPGTISDGEDGDESYPRIAHVQT 330
>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.9 bits (64), Expect = 3.8
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 84 YYKRTDDYKPILNRKKTGCFDVPMVHSAVLISMRYDVSDKLTYYPSKITNYDGPEDDIIA 143
YY R +DY I+ ++ G ++ V + LI + DV KL + S Y E D ++
Sbjct: 370 YYARAEDYIDIVEYRRVGIWNSAYVTGSYLI--QKDVLPKLKHAYS----YGNLEPD-LS 422
Query: 144 FALNSKALGIPLYICNEAIYG 164
F+ + GI +Y+ N +G
Sbjct: 423 FSKYLRDNGIFMYVTNMHYFG 443
>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 29.9 bits (64), Expect = 3.8
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 226 ERRQERRFLMELSFKELGMSVQHFSAIDGRNLDMNDLREYSITLMPNYEDPYHKRYIGRK 285
E+R+E R + + F S +DG++ N +RE + + P KR + K
Sbjct: 798 EKRKEGRIMASVDFSSEESSEDESWIVDGKDAPANRMRETNSVSSVGNKPPSRKR-LSLK 856
Query: 286 I--LLDGEEEYATP 297
I +D E ++ TP
Sbjct: 857 IEEKIDEESDHRTP 870
>SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 28.7 bits (61), Expect = 8.8
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 14 KSIE-IINKWVENYGSEYNGMYVTTNTSSGPLHSDESSSTNWSPNHFRHVIN--MREAAL 70
K+IE NK +ENY ++ Y+T + + E+ ST + N+ I +A
Sbjct: 307 KAIENYSNKAIENYSTKATENYITKARENYSTKAIENYSTKATENYSNKAIENYSTKATE 366
Query: 71 DFGRKLCGMTENYYYKRTDDY 91
++ K ENY K T++Y
Sbjct: 367 NYSNK---AIENYSTKATENY 384
>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
Length = 956
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 89 DDYKPILNRKKTGCFDVPMVHSAVLISMRYDVSDKLTYYPSKITNYDGPEDD 140
D++ P+ + K G P+V S + + Y + +K + P ++N D +DD
Sbjct: 75 DEHPPMTSEKVPGNAGGPVVISNCMSKLVYYMLNKYPFTPFFVSNNDDDDDD 126
>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 28.7 bits (61), Expect = 8.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 7 HSDFNEDKSIEIINKWVENYGSEYNGMYVTTNT 39
++++N D + E N++ Y +EYN Y NT
Sbjct: 261 YNEYNNDYNTEYNNEYNTEYNTEYNTEYTEYNT 293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,115,501
Number of Sequences: 59808
Number of extensions: 681716
Number of successful extensions: 1445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1403
Number of HSP's gapped (non-prelim): 44
length of query: 402
length of database: 16,821,457
effective HSP length: 84
effective length of query: 318
effective length of database: 11,797,585
effective search space: 3751632030
effective search space used: 3751632030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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