Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000621-TA|BGIBMGA000621-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002654|Glycosyl transferase, family
25
(402 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35639-5|CAA84699.2| 534|Caenorhabditis elegans Hypothetical pr... 138 9e-33
Z66512-7|CAA91321.1| 730|Caenorhabditis elegans Hypothetical pr... 45 1e-04
AF025452-2|AAB70943.1| 585|Caenorhabditis elegans Hypothetical ... 31 1.1
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 31 1.9
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr... 30 3.3
U23484-17|AAK68296.1| 367|Caenorhabditis elegans Tudor domain p... 29 4.4
AF303251-1|AAG50209.1| 367|Caenorhabditis elegans 2F713 protein. 29 4.4
AF003137-8|AAB93645.3| 494|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF003137-7|AAN84856.1| 433|Caenorhabditis elegans Hypothetical ... 29 7.7
AF003137-6|AAB93644.1| 497|Caenorhabditis elegans Hypothetical ... 29 7.7
>Z35639-5|CAA84699.2| 534|Caenorhabditis elegans Hypothetical
protein D2045.9 protein.
Length = 534
Score = 138 bits (333), Expect = 9e-33
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 2/118 (1%)
Query: 276 PYHKRYIGRKILLDGEEEYATPHT--TRPLYSYWTLGYLISERGAKKLLRADPLSKMLPV 333
P+ Y+GRK + EE + + H + YSYWTLGY++S GA+KLLR +PL KM+PV
Sbjct: 410 PWDLIYLGRKKQSENEELWISQHRHLSSVEYSYWTLGYMLSLNGARKLLRPNPLKKMVPV 469
Query: 334 DEFLPIMFDQHPNEEWKSHFENRDLIALSAAPLLVHPTHYTGQPGYISDTEDSDIVDP 391
DE+LPIMF++HPN++W HFE D+ A + PL+V P YT +PGY+SDTEDS IV P
Sbjct: 470 DEYLPIMFNKHPNKDWSLHFEPLDVEAFTLYPLVVFPQKYTNEPGYVSDTEDSVIVTP 527
Score = 74.9 bits (176), Expect = 9e-14
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 121 SDKLTYYPSKITNYDGPEDDIIAFALNSKALGIPLYICNEAIYGFVPVPLEDNDPLEKDY 180
S LT+ + NY+G +D F +++K +GI L+ N+ YGF P +D +
Sbjct: 197 SSYLTFDKDNLPNYEGADDPSEVFVVSAKNMGIQLWADNQVNYGFFVNPEKDIEERRSTI 256
Query: 181 EQMLNIKLEAISQGTPLP-LNHMLEEYVTHPNKWKFGCDEIYMINLERRQERRFLMELSF 239
+ + ++ PLP ++ + + + K G D+IY++NL+RRQER M+ F
Sbjct: 257 RYQI---ADFLADERPLPFVSRSVRPWQSEATKQ--GVDKIYLVNLKRRQERLNRMQKIF 311
Query: 240 KELGMSVQHFSAIDGRNLD--MNDLREYSITLMPNYEDPYHKR 280
LG+ A DG+ LD +L+ Y I + Y DP KR
Sbjct: 312 DILGIEYSLLEATDGQKLDELPEELKNYQI--LEGYLDPISKR 352
>Z66512-7|CAA91321.1| 730|Caenorhabditis elegans Hypothetical
protein F52H3.1 protein.
Length = 730
Score = 44.8 bits (101), Expect = 1e-04
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 82 NYYYKRTDDYKPILNRKKTGCFDVPMVHSAVLISMRYDVSDKLTYYPSKITNYDGPEDDI 141
N YY R++DY I+ + G ++VP + SAVL + + K Y +K N D P+ +
Sbjct: 424 NGYYARSEDYMAIVKGNRVGYWNVPFITSAVLFNKEKLEAMKDAYSYNK--NLD-PDMSM 480
Query: 142 IAFALNSKALGIPLYICNEAIYGFVPV 168
FA ++ G LYI NE YGF+ V
Sbjct: 481 CKFARDN---GHFLYIDNEKYYGFLIV 504
>AF025452-2|AAB70943.1| 585|Caenorhabditis elegans Hypothetical
protein B0454.6 protein.
Length = 585
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 281 YIGRKILLDGEEEYATPHTTRPLYSYWTLGYLISERGAKKLLRADPLSKMLPVDE 335
YIG ++L EE +PH T P+ ++ ++G +++ +L + L+ M+P D+
Sbjct: 246 YIGFEVLATAGEEVKSPHRTIPVATFLSIGVIMT----LYILVSSTLTLMVPYDQ 296
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 30.7 bits (66), Expect = 1.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 26 YGSEYNGMYVTTNTSSGPLHSDESSSTNWSPN 57
+G +Y +Y+ + S LHSD SS +WS N
Sbjct: 133 FGDDYRFVYIGASGSWTKLHSDVVSSHSWSAN 164
>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical protein
T04G9.1 protein.
Length = 1610
Score = 29.9 bits (64), Expect = 3.3
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 131 ITNYDGPED-DIIAFALNSKALGIPLYICNEAIYGFVPVPLEDNDPLEKDYEQMLNIKLE 189
+T+ D E+ +AF + + + + N YG V +P K +E L +
Sbjct: 1006 VTDLDVKEELSDLAFLIRTMYDNLDSKLQNHVRYGQVSLP--------KTFELKLKSIEQ 1057
Query: 190 AISQGTPLPLNHMLEEYVTHPNKWKFGCDEIYMINLERRQERRFLMELSFKELGMSVQHF 249
+ Q T + + +KWK + ++R +++ LM+ S+ +L S+Q F
Sbjct: 1058 RLGQWTSVKEKFRSKNVDASISKWKVAMNNYIAATMDREMKKQCLMD-SYLKLKKSIQCF 1116
Query: 250 SAI 252
AI
Sbjct: 1117 DAI 1119
>U23484-17|AAK68296.1| 367|Caenorhabditis elegans Tudor domain plus
rrm motif protein1 protein.
Length = 367
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 90 DYKPILNRKKTGCFDVPMVHSAVLISMRYDVSDKLTYYPSKITNYD 135
D+ I+N +K CF +P V ++ + D LT+ P I ++D
Sbjct: 216 DFGKIINYEKAKCFQLPKVFQSMPTRVSLCGLDGLTWSPVAIPSFD 261
>AF303251-1|AAG50209.1| 367|Caenorhabditis elegans 2F713 protein.
Length = 367
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 90 DYKPILNRKKTGCFDVPMVHSAVLISMRYDVSDKLTYYPSKITNYD 135
D+ I+N +K CF +P V ++ + D LT+ P I ++D
Sbjct: 216 DFGKIINYEKAKCFQLPKVFQSMPTRVSLCGLDGLTWSPVAIPSFD 261
>AF003137-8|AAB93645.3| 494|Caenorhabditis elegans Hypothetical
protein C27A12.8 protein.
Length = 494
Score = 29.5 bits (63), Expect = 4.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 227 RRQERRFLMELSFKELGMSVQHFSAIDGRNLDMNDLREYSITLMPNYEDPYHKRYIGRKI 286
+R + E + K+L M + S R+LD +L +TL +D Y RK+
Sbjct: 421 KRDNNAIIFESNQKDLEMETEQLSGFLERDLDNENL----VTLKQKVQDKYRYVEHRRKV 476
Query: 287 LLD 289
LLD
Sbjct: 477 LLD 479
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 29.1 bits (62), Expect = 5.8
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 101 GCFDVPMVHSAVLISMRYDVSDKLTYYPSKITNYDGPE--DDIIAFALNSKA 150
G DV VH +L+ D + L YP + N PE DD I A N A
Sbjct: 687 GIVDVVDVHKEMLVQQEDDQMENLLTYPDTLNNGFDPEFNDDPIDKAENPNA 738
>Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical
protein M03C11.4 protein.
Length = 541
Score = 29.1 bits (62), Expect = 5.8
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 267 ITLMPNYEDPYHKRYIGRKILLDGEE--EYATPHTTRPLYSYWTLGYLISERGAKKLLRA 324
I+ P YE ++ G + + G E E HT + LYSY + Y + L
Sbjct: 164 ISTAPRYEPEMVYQHFGDEETIFGYEDLEVTIHHTAQTLYSYINVSYSSKAKNENGLEAD 223
Query: 325 DPLSKMLPVD 334
D + K++ D
Sbjct: 224 DVIDKLVHPD 233
>AF003137-7|AAN84856.1| 433|Caenorhabditis elegans Hypothetical
protein C27A12.7b protein.
Length = 433
Score = 28.7 bits (61), Expect = 7.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 227 RRQERRFLMELSFKELGMSVQHFSAIDGRNLDMNDLREYSITLMPNYEDPYHKRYIGRKI 286
+R + E + K+L M + S + R+L+ DL +TL +D + RK+
Sbjct: 360 KRDNNSMIFESNQKDLEMETEQLSGLLERDLENEDL----LTLKQKVQDTFRYVEHRRKV 415
Query: 287 LLD 289
LLD
Sbjct: 416 LLD 418
>AF003137-6|AAB93644.1| 497|Caenorhabditis elegans Hypothetical
protein C27A12.7a protein.
Length = 497
Score = 28.7 bits (61), Expect = 7.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 227 RRQERRFLMELSFKELGMSVQHFSAIDGRNLDMNDLREYSITLMPNYEDPYHKRYIGRKI 286
+R + E + K+L M + S + R+L+ DL +TL +D + RK+
Sbjct: 424 KRDNNSMIFESNQKDLEMETEQLSGLLERDLENEDL----LTLKQKVQDTFRYVEHRRKV 479
Query: 287 LLD 289
LLD
Sbjct: 480 LLD 482
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,085
Number of Sequences: 27539
Number of extensions: 532947
Number of successful extensions: 1170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 13
length of query: 402
length of database: 12,573,161
effective HSP length: 83
effective length of query: 319
effective length of database: 10,287,424
effective search space: 3281688256
effective search space used: 3281688256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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