GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000621-TA|BGIBMGA000621-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002654|Glycosyl transferase, family
25
         (402 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      28   0.12 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   2.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 0.12
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)

Query: 32 GMYVTTNT-SSGPLHSDESSSTNWSPNHF 59
          G+Y+  N  SSG  HS ESS++N SP+H+
Sbjct: 19 GLYLLDNNDSSGIPHSAESSASN-SPDHY 46


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 79  MTENYYYKRTDDYKPILNRKKTGCFDVPMVHSAVLISMRYDV 120
           +T+ ++ + TD Y      + +G +++P  H     + RYD+
Sbjct: 417 LTDVFHVQETDKYDAYYGNRFSGEYEIP-AHGLPPSATRYDL 457


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 223 INLERRQERRFLMELSFKELGMSVQHFSAIDGRNLDMNDLREYSITLMPNYEDPYHKRYI 282
           I+ +R Q +R      FK   MS+   +A+  R LD+ ++       +P   D Y  R I
Sbjct: 481 IHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHR-I 539

Query: 283 GR 284
           GR
Sbjct: 540 GR 541


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 116 MRYDVSDKLTYYPSKITNYDGPEDDIIAFALNSKALGIPLYICNEAIYGFVPVPLED--- 172
           MR D S++ +Y   K      PE D++ F      + +   +   ++Y    +PL D   
Sbjct: 283 MRVDASEEYSYLRLKGQMLYIPESDLVTFLCYPSVMNLD-DLTRRSLY-LSDIPLHDATR 340

Query: 173 -----NDPLEKDYEQMLNIKL 188
                ++  E DY+   N++L
Sbjct: 341 DLVLMSEQFEADYKLTRNLEL 361


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 116 MRYDVSDKLTYYPSKITNYDGPEDDIIAFALNSKALGIPLYICNEAIYGFVPVPLED--- 172
           MR D S++ +Y   K      PE D++ F      + +   +   ++Y    +PL D   
Sbjct: 283 MRVDASEEYSYLRLKGQMLYIPESDLVTFLCYPSVMNLD-DLTRRSLY-LSDIPLHDATR 340

Query: 173 -----NDPLEKDYEQMLNIKL 188
                ++  E DY+   N++L
Sbjct: 341 DLVLMSEQFEADYKLTRNLEL 361


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,558
Number of Sequences: 429
Number of extensions: 6621
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 7
length of query: 402
length of database: 140,377
effective HSP length: 59
effective length of query: 343
effective length of database: 115,066
effective search space: 39467638
effective search space used: 39467638
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)