GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000621-TA|BGIBMGA000621-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002654|Glycosyl transferase, family
25
         (402 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01050.1 68415.m00010 hypothetical protein                          39   0.005
At5g04680.1 68418.m00476 expressed protein                             30   2.4  
At2g39950.1 68415.m04909 expressed protein                             30   3.1  
At5g63080.1 68418.m07917 transcription factor jumonji (jmjC) dom...    28   9.6  
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    28   9.6  
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    28   9.6  

>At2g01050.1 68415.m00010 hypothetical protein
          Length = 515

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 220 IYMINLERRQERRFLMELSFKELGMSVQH-FSAIDGRNLDMNDLREYSITLMPNYEDPYH 278
           ++ +     + ++ L EL  K  G+ + + F  +DG N D+ DLRE +IT  PN E+ YH
Sbjct: 305 VFAVGASGGRSKQRLRELP-KNQGVDLANRFGGLDG-NGDLPDLREVAITEGPNKENEYH 362

Query: 279 KRYIGR 284
            R +G+
Sbjct: 363 GRNVGK 368


>At5g04680.1 68418.m00476 expressed protein
          Length = 705

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/75 (21%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 176 LEKDYEQMLNIKLEAISQGTPLPLNHMLEEYVTHPNKWKFGCDEIYMINLERRQERRFLM 235
           + K Y++ + I L+ + +   L  + ++ + +   +KW  G DE+Y + +   Q ++ L+
Sbjct: 311 IHKVYKKSIYIPLKKVRKSFDLFPDTLMRKLLKGLSKWT-GIDEVYRLKVMHLQAKKLLL 369

Query: 236 ELSFKELGMSVQHFS 250
            +S + L + ++  S
Sbjct: 370 GISEETLTLGLKERS 384


>At2g39950.1 68415.m04909 expressed protein
          Length = 636

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 164 GFVPVPLEDNDPLEKDYEQMLNIKLEAISQGTPLPLNH 201
           G  P+P+E++  +EK   + L + +   +  T  PLNH
Sbjct: 544 GIPPLPVENDSLVEKGARETLRLLISGANATTSTPLNH 581


>At5g63080.1 68418.m07917 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain PF02373:
           jmjC domain
          Length = 462

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1   LHIFRIHSDFNEDKSIEIINKWVENYGSEYNGMYVTTNTSSGPLHSDESSSTNWSPN 57
           L+++  +   +ED+  +   K+ +   S+Y  +Y+    S  PLH+D   S +WS N
Sbjct: 135 LNVYLDNYQMHEDR--DSFQKYDQISCSDYRFVYMGGKGSWTPLHADVFRSYSWSAN 189


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 271 PNYEDPYHKRYIGRKILLDGEEEYATPHTTRPLYSYWTLGYLISERGA 318
           P  E P  +R+IG+ +  D      TP   +PL S    GY IS+ G+
Sbjct: 61  PPSESPDRRRFIGKAMESDYSVRPTTPPVQQPL-SGQKRGYPISDHGS 107


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 271 PNYEDPYHKRYIGRKILLDGEEEYATPHTTRPLYSYWTLGYLISERGA 318
           P  E P  +R+IG+ +  D      TP   +PL S    GY IS+ G+
Sbjct: 61  PPSESPDRRRFIGKAMESDYSVRPTTPPVQQPL-SGQKRGYPISDHGS 107


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,721,392
Number of Sequences: 28952
Number of extensions: 493408
Number of successful extensions: 1005
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 6
length of query: 402
length of database: 12,070,560
effective HSP length: 83
effective length of query: 319
effective length of database: 9,667,544
effective search space: 3083946536
effective search space used: 3083946536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)