Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000620-TA|BGIBMGA000620-PA|IPR005199|Glycoside hydrolase
family 79, N-terminal
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 32 0.17
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 31 0.29
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 30 0.67
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 30 0.67
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 29 2.0
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 28 2.7
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 27 4.7
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 27 4.7
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 8.3
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 267 NVRSWHQYYLNSKTAKLEDFWNPETFDLLRQQIETMQNQTKKYKNIPMWLSE 318
N+R W ++NSK ++ + +PET Q+++ + +Y+ W+S+
Sbjct: 127 NIREWSSKFMNSKASQKQQMLSPETM----QKVDLAGRASPRYQANDSWISK 174
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 31.5 bits (68), Expect = 0.29
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 240 DTTRPQPHRPECLKYMIEFLGNGSHYINVRSWHQYYLNSKTAKLEDFWNPETFD 293
D ++ + PE EFL + + V W Q++ SK ++E NPE FD
Sbjct: 26 DVSKKEDTEPEVRDEAKEFLLSQLPQVEVPEWAQWFDFSKVHEIEKKQNPEFFD 79
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 30.3 bits (65), Expect = 0.67
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 197 NEPNSFQHVFNESVTPQILAKDFEKLRKLLNHNGYRHSL 235
N+ SFQ + N L +D E+L+K+ H G RH+L
Sbjct: 91 NDGKSFQLLANN--VDSKLREDLERLKKIQTHRGLRHAL 127
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 30.3 bits (65), Expect = 0.67
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 197 NEPNSFQHVFNESVTPQILAKDFEKLRKLLNHNGYRHSL 235
N+ SFQ + N L +D E+L+K+ H G RH+L
Sbjct: 91 NDGKSFQLLANN--VDSKLREDLERLKKIQTHRGLRHAL 127
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 252 LKYMIEFLGNGSHYINVRSWHQYYLNSKTAKLE 284
L ++I LGNG Y+ V W + ++ + A LE
Sbjct: 203 LLFVIFLLGNGFVYVPVSMWKKAFITKRAALLE 235
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 28.3 bits (60), Expect = 2.7
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 94 ERLIFSKENIPISCHNCSYKSYPKSLCQLIEKPCKHKHKFLPFFIMTGNEWNQINDFCRK 153
ER + SKE + SCH+C K+ K L K P M + Q N+F
Sbjct: 305 ERFV-SKEKVQYSCHSCGSKNAIKQLV---------FDKLPPTICMQLKRFEQ-NNFAMS 353
Query: 154 TNLKLLFSLNAMLRDNHGWNE 174
T + S A LR + +N+
Sbjct: 354 TKIDKQVSYPAFLRMRYNFNQ 374
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 341 IDKLGLSAKYNISTVIRQSFIGGYYSLVDENLKPLPDWWISVLYKKLVGNKVLQVQ 396
+ ++G + N +++++ IG +L+ +P +W+SV+ +++G K +Q+Q
Sbjct: 383 LQEMGFNKGVNEYHILQKNAIG---NLIIAVAGYIPGYWVSVVLIEVMGRKWIQIQ 435
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 240 DTTRPQPHRPECLKYMIEFLGNGSH 264
DT +P +P+ KY IEF G G+H
Sbjct: 706 DTLLQEPKKPDWTKYSIEFCG-GTH 729
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 184 SKHKQYAIDWQLGNEPNSFQHVFNESVTPQILAKDFEKLRKLLNHNGYRHSLIVGPDTTR 243
S K+ + + ++PN + NE+ + +++ K+ + ++ Y++ L V P+TT
Sbjct: 75 SLKKEITLQIERCSDPNERGKLVNEAKGLKKKTEEYNKIISKVTNDLYQYCLAV-PNTTL 133
Query: 244 PQ-PHRPECLKYMIEFLGN 261
P P PE +++ +G+
Sbjct: 134 PTVPVGPEDKAVVVQKIGS 152
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,567
Number of Sequences: 5004
Number of extensions: 117391
Number of successful extensions: 299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 9
length of query: 514
length of database: 2,362,478
effective HSP length: 76
effective length of query: 438
effective length of database: 1,982,174
effective search space: 868192212
effective search space used: 868192212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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