GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000620-TA|BGIBMGA000620-PA|IPR005199|Glycoside hydrolase
family 79, N-terminal
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   1e-17
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   4e-17
SB_35513| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   1e-04
SB_28368| Best HMM Match : Pentaxin (HMM E-Value=9.5e-11)              33   0.42 
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.55 
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)                 32   0.96 
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.9  
SB_43227| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.1  
SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)             30   5.1  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   6.8  
SB_47173| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.0  
SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)               29   9.0  
SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.0  
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.0  

>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 88.6 bits (210), Expect = 1e-17
 Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 5/174 (2%)

Query: 130 KHKFLPFFIMTGNEWNQINDFCRKTNLKLLFSLNAMLRDNHG-WNEKNARELIEFSKHKQ 188
           +HK    F +T ++  +I     K  + +LF LNA LR++ G WN  N  E+++    + 
Sbjct: 67  EHKNFTDFTITPDDLERIAMIGNKGGVDVLFGLNACLRNSDGTWNYTNPLEILKHIASQG 126

Query: 189 YAIDWQLGNEPNSFQHVFNESVTPQILAKDFEKLRKLLNHNGYRHSLIVGPDTTRP-QPH 247
           Y   W+LGNEPN     FN S+    LA DF  LRK+L+ N     ++VGPD TRP    
Sbjct: 127 YDFGWELGNEPNHLSK-FNRSIPAVNLAHDFITLRKILDKNPDYGHILVGPDVTRPINKI 185

Query: 248 RPECLKYMIEFLGNGSHYINVRSW-HQYYLNSKTAKLEDFWNPETFDLLRQQIE 300
                +Y+  FL      ++  +W HQY + S T    +    +T  +LR  +E
Sbjct: 186 NTPSQQYLESFLSVARGSVDAVTWHHQYQVGSITVMAINLNTHDTV-ILRLTVE 238



 Score = 33.9 bits (74), Expect = 0.32
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 420 AVTLYGVNLEMAKARFFLNGTALHGDDLIIHEYIISAPSNNRKSKTILLNGWPLYY--ES 477
           ++T+  +NL             L G  L + +Y+++    +  S  + LNG  L    + 
Sbjct: 217 SITVMAINLNTHDTVILRLTVELSG--LPVDQYLLTPGDKDITSGNVKLNGEVLEMIDDV 274

Query: 478 NLHNLRPNIHRYGRYVSLPPYSIGFWVIKKTSITVC 513
              NL+P     G  ++LPP + GFWV+       C
Sbjct: 275 TFPNLKPLSIPTGE-ITLPPLTFGFWVVPDAKAAAC 309


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 86.6 bits (205), Expect = 4e-17
 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 4/130 (3%)

Query: 206 FNESVTPQILAKDFEKLRKLLNHNGYRHSLIVGPDTTRPQPHRPECLKYMIEFLGNGSHY 265
           F   V    L K F+ LR++L+H+    +L VGPD T     +     Y+  FL    H 
Sbjct: 65  FGHPVDAFELGKSFQTLREILDHSRLGGNL-VGPDITSISKRKKT--DYLSGFLDVAGHA 121

Query: 266 INVRSWHQYYLNSKTAKLEDFWNPETFDLLRQQIETMQNQTKKY-KNIPMWLSETSSSYG 324
           I   +WHQYY+N K   +EDF+NP+  D + ++   + +   ++      W+ ETSS+YG
Sbjct: 122 IQAVTWHQYYMNGKNCSIEDFYNPDVLDAMIREASILNDIVSQHAPGKRGWMGETSSAYG 181

Query: 325 GGAPGLSNTY 334
           GGA  +S+ Y
Sbjct: 182 GGATNMSDRY 191


>SB_35513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 146 QINDFCRKTNLKLLFSLNAMLRDNHG-WNEKNARELIEFSKHKQYAIDWQLGNEPNSFQH 204
           ++ DF  +    + F LN  LR   G WN  N  EL++++  K Y   W+LGN  N  +H
Sbjct: 2   KLRDFAVRAGFDVYFGLNVALRSKDGTWNYTNPIELVKYATRKAYNFSWELGN-GNPIRH 60


>SB_28368| Best HMM Match : Pentaxin (HMM E-Value=9.5e-11)
          Length = 1160

 Score = 33.5 bits (73), Expect = 0.42
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 135 PFFIMTGNEWNQINDFCRKTNLKLLFSLNAMLRDNHGWNEKNARELIEFSKHKQYAID 192
           P  + T   W Q+ D    T  +L F +   L  NH    KNA+ LI+F  +K Y  D
Sbjct: 290 PTEVKTHPTWTQLTD--GTTIAELEFDMREPLYGNHAPIAKNAKRLIKFRNNKWYTSD 345


>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 33.1 bits (72), Expect = 0.55
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 329  GLSNTYAGSPLWIDKLG--LSAKYNISTVIRQS-----FIGGYYSLVDENLKPLPDWWIS 381
            GL  T AG  L +D+L   L+   NI  +I +       I G  ++V EN+   P W+ +
Sbjct: 1037 GLPPT-AGWGLGVDRLTMFLTDSNNIKILIDRETVSYVLIRGSENVVGENVHGYPFWFCT 1095

Query: 382  VLYKKLVGNKVLQVQ-CNCSRFQRLYIHCTNR 412
            +++  LV N V + Q    S+F+++ +H   R
Sbjct: 1096 IVFTILVCNAVFRKQWVEASKFKQVTVHIKKR 1127


>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
          Length = 1011

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 244 PQPHRPECLKYMIEFLGNGSHYINVRSWHQYYLNSKTAKLEDFWNPETFDLLRQQIETM- 302
           P  H P C K+    +   SHY       Q  L +   K +     E FD L ++ + M 
Sbjct: 618 PDTHCPLCKKWFNSRVQADSHYSGKAHLTQVDLYNMQPKFKKTKEEEEFDKLLEEADAMT 677

Query: 303 QNQTKKYKNIPM 314
           Q + K  KNI +
Sbjct: 678 QQEVKNVKNIKL 689


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 151 CRKTNLKLLFSLNAMLRDNHGWNEKNARELIEFSKHKQYAIDWQLGNEP--NSFQHVFNE 208
           C KTN+  + S+N +LR++    EK AR + E  KH Q+ +  Q+  +P  N +    N 
Sbjct: 88  CDKTNVPSVSSINRILRNSAA--EKEARAVHEQVKHVQH-LQQQIALQPQLNGYPSQINF 144

Query: 209 SVTPQILA 216
           S  PQ  A
Sbjct: 145 SF-PQTAA 151


>SB_43227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 107 CHNCSYKSYPKSLCQLIEKPCKH 129
           CHNC  K + K +CQ   KP +H
Sbjct: 42  CHNCGKKRHFKEVCQSEPKPKQH 64


>SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)
          Length = 327

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 239 PDTTRPQPHRPECLKYMIEFLGNGSHYINVRSWHQYYLNSKTAKLED 285
           PDT  P  + P+CL+  +E L   S  ++ R+++   +N   A+L +
Sbjct: 233 PDTRMPMIYIPDCLRATVELLEAPSECLSQRTYNLGAVNFTPAELTE 279


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 173 NEKNARELIEFSKHKQYAIDWQLGNEPNSFQHVFNESVTPQILAKDFEKLRKL 225
           N     E ++ +K+  +A+ W +G +PN  +H F +  +  I   D   +++L
Sbjct: 4   NNSTTTESMQPAKNVHFAV-WDIGGQPNLRKHYFTDDKSGLIYVVDSTDIQRL 55


>SB_47173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 98  FSKENIPISCHNCSYKSYPKSLCQ-LIEKPCKHKHKFLP 135
           +SK ++P +CH C+ K    +  + L EKP K+K +  P
Sbjct: 319 YSKRHVPATCHKCNLKKRNDTEKETLKEKPGKNKKEQEP 357


>SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)
          Length = 283

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 181 IEFSKHKQYAIDWQLGNEPNSF-------QHVFNE-SVTPQILAKDFEKLRKLLN 227
           IE  K K+   D QLG EP+         +HV  E  VTPQ   K FEK  K  N
Sbjct: 66  IEKKKKKRQREDKQLGEEPSKVKKSKTEQEHVKTEKGVTPQNSQKHFEKKPKNFN 120


>SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 98  FSKENIPISCHNCSYKSYPKSLCQ-LIEKPCKHKHKFLP 135
           +SK ++P +CH C+ K    +  + L EKP K+K +  P
Sbjct: 356 YSKRHVPATCHKCNLKKRNDTEKETLKEKPGKNKKEQEP 394


>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 141 GNEWNQINDFCRKTNLKLLFSLNAML------RDNHGWNEKNARELIEFSKHKQYAIDWQ 194
           G+      D C   N+ +    N +       R  HG  + N +E+ E  K ++  +  +
Sbjct: 689 GDSLGDFVDLCCMANVSVFIMENTLYGYYIHGRSVHGRADTNMKEMNEQLKREEEDLCGK 748

Query: 195 LGNEPNSFQHVFNESVTPQILAKDFEKLRKLLNHNG 230
            G EPN+    F E   PQ   + ++K+ + L   G
Sbjct: 749 RGLEPNTENQTF-EVGLPQKFRQQYDKVVEPLTARG 783


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,435
Number of Sequences: 59808
Number of extensions: 778830
Number of successful extensions: 1759
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1749
Number of HSP's gapped (non-prelim): 15
length of query: 514
length of database: 16,821,457
effective HSP length: 85
effective length of query: 429
effective length of database: 11,737,777
effective search space: 5035506333
effective search space used: 5035506333
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)