GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000620-TA|BGIBMGA000620-PA|IPR005199|Glycoside hydrolase
family 79, N-terminal
         (514 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-6|CAD21698.1|  145|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain (pr...    31   1.9  
AF043699-7|AAK84627.1|  927|Caenorhabditis elegans Dipeptidyl pe...    31   2.6  
AF043699-6|AAB97564.1|  931|Caenorhabditis elegans Dipeptidyl pe...    31   2.6  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    29   7.8  

>Z75526-6|CAD21698.1|  145|Caenorhabditis elegans Hypothetical
           protein C06H2.6 protein.
          Length = 145

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 19/54 (35%), Positives = 27/54 (50%)

Query: 222 LRKLLNHNGYRHSLIVGPDTTRPQPHRPECLKYMIEFLGNGSHYINVRSWHQYY 275
           L   L+++ +R  LIV   TT PQ H+ +   +   F    SH I V S  +YY
Sbjct: 35  LPSTLDNSRFRQQLIVSHVTTIPQIHKLDMGGHQTTFALYESHQIAVHSIDKYY 88


>U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 4 protein.
          Length = 274

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 21  LVLFVKYNGGVRYFVTINENQEDIKLISED 50
           LVL   YNGG  Y +  N+ Q D KLI ED
Sbjct: 158 LVLVAGYNGGYLYLLAYNQKQLD-KLIDED 186


>AF043699-7|AAK84627.1|  927|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 3, isoform b protein.
          Length = 927

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 148 NDFCRKTNLKLLFSLNAMLRDNHGWNEKNARELIEFSKHKQYAIDWQL 195
           N +CR T  KLL + N  +  + G      REL+ +  ++ +  +W +
Sbjct: 524 NGYCRHTEEKLLMAENFSINKSMGIVVDEVRELVYYVANESHPTEWNI 571


>AF043699-6|AAB97564.1|  931|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 3, isoform a protein.
          Length = 931

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 148 NDFCRKTNLKLLFSLNAMLRDNHGWNEKNARELIEFSKHKQYAIDWQL 195
           N +CR T  KLL + N  +  + G      REL+ +  ++ +  +W +
Sbjct: 528 NGYCRHTEEKLLMAENFSINKSMGIVVDEVRELVYYVANESHPTEWNI 575


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 258 FLGNGSHYINV--RSWHQYYLNSKTAKLEDFWNPETFDLLRQQI--ETMQNQTKKYKNIP 313
           + GN  +Y     + W   Y N+     +++++P  +    QQ    + QNQ +   N P
Sbjct: 30  YYGNAQYYETQPQQQWSSQYQNN-----QNYYSPYFYGYQHQQTWQNSNQNQYQTLYNRP 84

Query: 314 MWLSETSSSYGGGA 327
            W+SE +    G A
Sbjct: 85  SWISENTGGNNGYA 98


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,710,337
Number of Sequences: 27539
Number of extensions: 615079
Number of successful extensions: 1363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 7
length of query: 514
length of database: 12,573,161
effective HSP length: 85
effective length of query: 429
effective length of database: 10,232,346
effective search space: 4389676434
effective search space used: 4389676434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)