GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000620-TA|BGIBMGA000620-PA|IPR005199|Glycoside hydrolase
family 79, N-terminal
         (514 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   2.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   2.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   6.1  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    23   8.0  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    23   8.0  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    23   8.0  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    23   8.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   8.0  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 287 WNPETFDLLRQQIETMQNQTKKYKNIPMWLSETSSSYGGGAPGLSNTYAGSPLWIDKLGL 346
           W P   D LR      + + +    + + L   + +Y G   G+S+TY       D  G 
Sbjct: 342 WVPGNHDQLRLVSRFGEEKARMITTMSLLLPGVAVNYYGDEIGMSDTYISWEDTQDPQGC 401

Query: 347 SA-KYNISTVIR 357
            A K N  T+ R
Sbjct: 402 GAGKENYQTMSR 413


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 287 WNPETFDLLRQQIETMQNQTKKYKNIPMWLSETSSSYGGGAPGLSNTYAGSPLWIDKLGL 346
           W P   D LR      + + +    + + L   + +Y G   G+S+TY       D  G 
Sbjct: 342 WVPGNHDQLRLVSRFGEEKARMITTMSLLLPGVAVNYYGDEIGMSDTYISWEDTQDPQGC 401

Query: 347 SA-KYNISTVIR 357
            A K N  T+ R
Sbjct: 402 GAGKENYQTMSR 413


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 117 KSLCQLIEKPCKHKHKFLPFFIMTGNEWNQIN---DFCRKTNLKLLFSLNAMLRDNHGWN 173
           K+ C L  KP   + +  P F+    E N  +   D  ++  L+  +S   +L   H   
Sbjct: 344 KNNCPLHCKPELGQSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWS--RVLGRVHATI 401

Query: 174 EKNARELIEFSKHKQYAIDWQ 194
           E+N + L E  + ++   DW+
Sbjct: 402 ERNEKRLAEQDRRERMEFDWK 422


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 453 IISAPSNNRKSKTILLNGWPLYYESN-LHNLRPNIHRYGRYVSLPPYSIGFWVIKKTSI 510
           IIS+ SNN        N  PLYY  N +  +   +     Y + PP  +G +V  +  I
Sbjct: 81  IISSLSNNYNYNNYNNNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMGPFVSMQEQI 139


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 453 IISAPSNNRKSKTILLNGWPLYYESN-LHNLRPNIHRYGRYVSLPPYSIGFWVIKKTSI 510
           IIS+ SNN        N  PLYY  N +  +   +     Y + PP  +G +V  +  I
Sbjct: 81  IISSLSNNYNYNNYNNNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMGPFVSMQEQI 139


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 453 IISAPSNNRKSKTILLNGWPLYYESN-LHNLRPNIHRYGRYVSLPPYSIGFWVIKKTSI 510
           IIS+ SNN        N  PLYY  N +  +   +     Y + PP  +G +V  +  I
Sbjct: 81  IISSLSNNYNYNNYNNNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMGPFVSMQEQI 139


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 453 IISAPSNNRKSKTILLNGWPLYYESN-LHNLRPNIHRYGRYVSLPPYSIGFWVIKKTSI 510
           IIS+ SNN        N  PLYY  N +  +   +     Y + PP  +G +V  +  I
Sbjct: 81  IISSLSNNYNYNNYNNNYKPLYYNINYIEQIPVPVPFPVYYGNFPPRPMGPFVSMQEQI 139


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 106 SCHNCSYKSYPKSLCQLIE 124
           SCH C Y     S C +++
Sbjct: 42  SCHKCKYGIAMSSACGIVQ 60


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,543
Number of Sequences: 429
Number of extensions: 8053
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 9
length of query: 514
length of database: 140,377
effective HSP length: 61
effective length of query: 453
effective length of database: 114,208
effective search space: 51736224
effective search space used: 51736224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)