GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000619-TA|BGIBMGA000619-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type, IPR002048|Calcium-binding EF-hand,
IPR000886|Endoplasmic reticulum targeting sequence
         (148 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   5.9  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   5.9  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    20   7.8  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    20   7.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 27   PPHATLHFEVELINIGDSPPATNVFKEIDADKDN 60
            PP  T H++ +      + P T V + ID   D+
Sbjct: 1176 PPSTTNHWQTKTTTSTTTRPTTTVSQLIDDKCDS 1209


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 82  GELSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHEE 139
           GE          K      +  E  E+    + S+ ++V+E  + E+ D N   + EE
Sbjct: 412 GEQKSRRKGPAFKVDPTQVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNNNNNKEE 469


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)

Query: 63  SREEVSIELAFQAMDTDRDGELSREEVSDYLK 94
           SRE  S E    A   D D EL       Y+K
Sbjct: 127 SRETKSSESDSGASSADPDDELRSSSAFSYIK 158


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 61  MLSREEVSIELAFQAMDTDRDG 82
           +LS  E ++ +   A D D+DG
Sbjct: 177 LLSIGETAMGIKLNASDNDKDG 198


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 61  MLSREEVSIELAFQAMDTDRDG 82
           +LS  E ++ +   A D D+DG
Sbjct: 177 LLSIGETAMGIKLNASDNDKDG 198


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,452
Number of Sequences: 317
Number of extensions: 1292
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 148
length of database: 114,650
effective HSP length: 52
effective length of query: 96
effective length of database: 98,166
effective search space:  9423936
effective search space used:  9423936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)