GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000618-TA|BGIBMGA000618-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
         (62 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    40   4e-05
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    27   0.29 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   1.2  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    24   2.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    24   2.7  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    23   6.3  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
          Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 39.9 bits (89), Expect = 4e-05
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 39 KHGDMLTMHYTGTLDDGHKFDSRI 62
          K GD +TMHYTGTL +G KFDS +
Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSSV 41


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 14  AGAGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFD 59
           A + P+   LK  VV   V  G    + +G  + M Y G L++G  FD
Sbjct: 246 APSSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFD 293


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 14  AGAGPEVTELKTEVVSVPEGCTTKSKHG--DMLTMHYTGTLDDGHKFDS 60
           A   P  ++    +++  + C T  K    D L +  + +LDD  +FDS
Sbjct: 559 ANVWPLASQASRAILNAYKSCATSPKENNEDSLPLQRSPSLDDVSRFDS 607


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 19  EVTELKTEVVSVPEGCTTKSKH 40
           ++T L+ +++ +PEG +T  KH
Sbjct: 179 QLTPLQRKLMGLPEGGSTSGKH 200


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 20  VTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDD 54
           +  L+  ++ + E C TKS H +   + Y   L D
Sbjct: 340 IMSLRVFILVIQEFCNTKSSHPETAQVLYNSFLVD 374


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 19  EVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSRI 62
           +V E    V    +G    +K    ++M Y G L +G  FD  I
Sbjct: 254 QVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLTNGKVFDKNI 297


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,381
Number of Sequences: 5004
Number of extensions: 6588
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 62
length of database: 2,362,478
effective HSP length: 43
effective length of query: 19
effective length of database: 2,147,306
effective search space: 40798814
effective search space used: 40798814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)