Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000618-TA|BGIBMGA000618-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
(62 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1791 - 39907362-39907453,39907682-39907753,39907941-399080... 50 3e-07
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 36 0.003
08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333... 35 0.007
02_03_0280 - 17256524-17256733,17256838-17256958,17257318-172574... 34 0.013
04_03_0532 - 16824394-16824447,16824545-16824665,16824748-168248... 34 0.017
06_03_1031 - 27018871-27018916,27018987-27019110,27019251-270193... 31 0.12
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 27 1.9
04_04_0023 + 22212226-22212450,22213511-22213753,22214189-22214320 26 3.3
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 26 3.3
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 26 3.3
05_04_0211 + 19088656-19088965,19089911-19089987,19090964-190910... 25 7.7
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 25 7.7
04_04_0108 - 22830485-22830706,22830817-22830954,22831091-228313... 25 7.7
>01_06_1791 -
39907362-39907453,39907682-39907753,39907941-39908045,
39908212-39908302,39908787-39908849,39909448-39909497,
39909632-39909716
Length = 185
Score = 49.6 bits (113), Expect = 3e-07
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 8 LMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
L+L A A +VTEL+ V PE CT ++ GD + +HY G+L DG FDS
Sbjct: 25 LILTASAKKSGDVTELQIGVKYKPESCTLQAHKGDKIKVHYRGSLTDGSVFDS 77
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 36.3 bits (80), Expect = 0.003
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 31 PEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
PE C+ ++ GD + +HY G L DG FDS
Sbjct: 139 PESCSIQAHKGDRVKVHYRGKLTDGTDFDS 168
>08_02_1322 +
26131395-26131599,26132382-26132468,26133119-26133372,
26133430-26133526,26133613-26133693,26133782-26133976,
26134093-26134182,26134296-26134471,26134565-26134687,
26134799-26134945,26135027-26135163,26135247-26135364,
26135462-26135518
Length = 588
Score = 35.1 bits (77), Expect = 0.007
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 23 LKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
L+ +++ EG T GD + +HYTGTL DG KFDS
Sbjct: 47 LRKKLLKEGEGWETPEV-GDEVEVHYTGTLLDGKKFDS 83
>02_03_0280 -
17256524-17256733,17256838-17256958,17257318-17257445,
17257603-17257671,17257757-17257882,17257970-17258235,
17258341-17258535,17258614-17258694,17258729-17258851,
17258941-17259201,17260044-17260130,17260260-17260578
Length = 661
Score = 34.3 bits (75), Expect = 0.013
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 23 LKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
L+ ++V EG + GD + +HYTGTL DG KFDS
Sbjct: 85 LRKKLVKEGEGWE-RPDAGDEVQVHYTGTLLDGTKFDS 121
>04_03_0532 -
16824394-16824447,16824545-16824665,16824748-16824875,
16825457-16825603,16825682-16825807,16825895-16826160,
16826259-16826453,16826577-16826657,16826756-16826830,
16827270-16827530,16827633-16827719,16827844-16828060
Length = 585
Score = 33.9 bits (74), Expect = 0.017
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 37 KSKHGDMLTMHYTGTLDDGHKFDS 60
+ + GD + +HYTGTL DG KFDS
Sbjct: 64 RPESGDEVQVHYTGTLLDGTKFDS 87
>06_03_1031 -
27018871-27018916,27018987-27019110,27019251-27019311,
27019466-27019558,27019663-27020016
Length = 225
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 33 GCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
G ++ G ++ HYTG L+DG FDS
Sbjct: 106 GTGAAAEQGQLIKAHYTGRLEDGTVFDS 133
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 13 LAGAGPEVTELKTEVVSVPEGCTTKSK 39
+AG P+++E KT V+ P+ +TKS+
Sbjct: 492 IAGNIPDLSEDKTPVIDAPKDASTKSE 518
>04_04_0023 +
22212226-22212450,22213511-22213753,22214189-22214320
Length = 199
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 MTTLRCVLMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDML 44
+TTL + G G VT+L VV + +GC G++L
Sbjct: 17 LTTLMIRRRPTVVNGGGFVVTDLGNNVVFIVDGCGILGSKGELL 60
>03_02_0067 +
5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 5 RCVLMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTL 52
+C+ L AL + ++T + S+PEG S+ + LT+ TGTL
Sbjct: 613 KCLESLAALLSSQTLRDAIRTSINSMPEG--QSSRCIEELTLDLTGTL 658
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 30 VPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
V G + G ++ +HYT DG FDS
Sbjct: 119 VEVGTGAQPPRGQLINVHYTARFTDGIVFDS 149
>05_04_0211 +
19088656-19088965,19089911-19089987,19090964-19091047,
19091130-19091243,19091861-19091947,19092000-19092107,
19092643-19092710,19093044-19093131,19093225-19093298,
19093454-19093817,19094024-19094070,19094154-19094235,
19095698-19095817
Length = 540
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 14 AGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFD 59
AG G E+T +T ++S T K+ M + T +LD K D
Sbjct: 237 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVDSKLD 282
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 20 VTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDD 54
V +LK+++V +PE C T GD + ++ L D
Sbjct: 147 VNDLKSQIVVLPEACVT---DGDTVEQNHPCKLHD 178
>04_04_0108 -
22830485-22830706,22830817-22830954,22831091-22831355,
22831490-22831725,22831906-22832421,22834960-22835300,
22835453-22835459
Length = 574
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 3 TLRCVLMLVALAGAGPEVTELKTEVVSVPEG 33
T R VL+L+A A A + EVV+ P G
Sbjct: 12 TARLVLLLLAAAAAAAAAAVGRREVVTSPHG 42
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,909
Number of Sequences: 37544
Number of extensions: 53717
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 13
length of query: 62
length of database: 14,793,348
effective HSP length: 42
effective length of query: 20
effective length of database: 13,216,500
effective search space: 264330000
effective search space used: 264330000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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