GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000618-TA|BGIBMGA000618-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
         (62 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       58   1e-09
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   2e-04
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)                 28   1.2  
SB_36858| Best HMM Match : PAX (HMM E-Value=1.3)                       25   8.8  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 31/62 (50%), Positives = 36/62 (58%)

Query: 1  MTTLRCVLMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
          M  L  V       GA     ELK EVVS PE CT K+  GD L+MHYTG L +G+KFDS
Sbjct: 5  MNLLAIVAFSGLALGAEEPKGELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDS 64

Query: 61 RI 62
           +
Sbjct: 65 SL 66


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 22  ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
           +++ E   VP  C  K+K GD + +HYTG + DG  FD+
Sbjct: 99  KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDT 137


>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 18 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 56
          P  T  K +++  P+G  TK +HG++ T+ +     DG+
Sbjct: 51 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 87


>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
          Length = 466

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 18  PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 56
           P  T  K +++  P+G  TK +HG++ T+ +     DG+
Sbjct: 165 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 201


>SB_36858| Best HMM Match : PAX (HMM E-Value=1.3)
          Length = 197

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 35  TTKSKHGDMLTMHYTGTLDDGHKFD 59
           +TK K GD LT+   G LD+    +
Sbjct: 106 STKKKMGDQLTIEIRGALDNAQSVE 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,180
Number of Sequences: 59808
Number of extensions: 59170
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 5
length of query: 62
length of database: 16,821,457
effective HSP length: 41
effective length of query: 21
effective length of database: 14,369,329
effective search space: 301755909
effective search space used: 301755909
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)