Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000618-TA|BGIBMGA000618-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
(62 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68760-1|CAA92994.1| 139|Caenorhabditis elegans Hypothetical pr... 50 2e-07
AF016430-1|AAB65370.1| 261|Caenorhabditis elegans Fk506-binding... 34 0.014
U27353-1|AAA68610.1| 108|Caenorhabditis elegans rotamase protein. 31 0.076
AL034393-20|CAA22330.1| 108|Caenorhabditis elegans Hypothetical... 31 0.076
AL034393-19|CAA22328.1| 290|Caenorhabditis elegans Hypothetical... 31 0.13
Z92832-2|CAB07371.1| 431|Caenorhabditis elegans Hypothetical pr... 30 0.23
Z66513-3|CAA91330.2| 186|Caenorhabditis elegans Hypothetical pr... 26 3.8
U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell m... 25 5.0
U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell m... 25 5.0
AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance prot... 25 5.0
>Z68760-1|CAA92994.1| 139|Caenorhabditis elegans Hypothetical
protein F36H1.1 protein.
Length = 139
Score = 50.0 bits (114), Expect = 2e-07
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 8 LMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
L+ +A A ++ +L+ V E C KS+ GD L MHYTGTL DG +FDS
Sbjct: 12 LLAIAYAADEQKIDKLQIGVKKRAENCVQKSRKGDQLHMHYTGTLLDGTEFDS 64
>AF016430-1|AAB65370.1| 261|Caenorhabditis elegans Fk506-binding
protein family protein3 protein.
Length = 261
Score = 33.9 bits (74), Expect = 0.014
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 32 EGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
EGCT K++ GD L YT L+DG DS
Sbjct: 157 EGCTEKAQAGDTLHQQYTLNLEDGSFIDS 185
>U27353-1|AAA68610.1| 108|Caenorhabditis elegans rotamase
protein.
Length = 108
Score = 31.5 bits (68), Expect = 0.076
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 36 TKSKHGDMLTMHYTGTLDDGHKFDS 60
TK K+G +T HY TL++G K DS
Sbjct: 15 TKPKNGQTVTCHYVLTLENGKKIDS 39
>AL034393-20|CAA22330.1| 108|Caenorhabditis elegans Hypothetical
protein Y18D10A.19 protein.
Length = 108
Score = 31.5 bits (68), Expect = 0.076
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 36 TKSKHGDMLTMHYTGTLDDGHKFDS 60
TK K+G +T HY TL++G K DS
Sbjct: 15 TKPKNGQTVTCHYVLTLENGKKIDS 39
>AL034393-19|CAA22328.1| 290|Caenorhabditis elegans Hypothetical
protein Y18D10A.25 protein.
Length = 290
Score = 30.7 bits (66), Expect = 0.13
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 36 TKSKHGDMLTMHYTGTLDDGHKFDS 60
TKSK+G +T HY L DG K DS
Sbjct: 211 TKSKNGQTVTCHYVLILVDGTKIDS 235
>Z92832-2|CAB07371.1| 431|Caenorhabditis elegans Hypothetical
protein F31D4.3 protein.
Length = 431
Score = 29.9 bits (64), Expect = 0.23
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 37 KSKHGDMLTMHYTGTLDDGHKFDS 60
K G + +HY GTL++G KFDS
Sbjct: 29 KPTTGTTVKVHYVGTLENGTKFDS 52
>Z66513-3|CAA91330.2| 186|Caenorhabditis elegans Hypothetical
protein F54D5.3 protein.
Length = 186
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 1 MTTLRCVLMLVALAGAGPEVTELKTE--VVSVPEGCTTKSKHGDMLTMHY 48
M C L+LVA+ AG V T + S+ EG T S G L Y
Sbjct: 1 MNRFSCALLLVAVGFAGANVCTDDTGHWMFSLAEGVTDYSYGGSKLNTKY 50
>U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell
migration protein13, isoform b protein.
Length = 356
Score = 25.4 bits (53), Expect = 5.0
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 2 TTLRCVLMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSR 61
T+ CVLMLVA G V L+ +V S E T K + H T TLD +R
Sbjct: 58 TSRNCVLMLVAPIGYSIRVRALQFDVAST-ENARTCEKDTLHVFDHET-TLDPESYAPAR 115
Query: 62 I 62
I
Sbjct: 116 I 116
>U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell
migration protein13, isoform a protein.
Length = 362
Score = 25.4 bits (53), Expect = 5.0
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 2 TTLRCVLMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSR 61
T+ CVLMLVA G V L+ +V S E T K + H T TLD +R
Sbjct: 64 TSRNCVLMLVAPIGYSIRVRALQFDVAST-ENARTCEKDTLHVFDHET-TLDPESYAPAR 121
Query: 62 I 62
I
Sbjct: 122 I 122
>AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance protein
MIG-13 protein.
Length = 362
Score = 25.4 bits (53), Expect = 5.0
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 2 TTLRCVLMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSR 61
T+ CVLMLVA G V L+ +V S E T K + H T TLD +R
Sbjct: 64 TSRNCVLMLVAPIGYSIRVRALQFDVAST-ENARTCEKDTLHVFDHET-TLDPESYAPAR 121
Query: 62 I 62
I
Sbjct: 122 I 122
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,799
Number of Sequences: 27539
Number of extensions: 40628
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 10
length of query: 62
length of database: 12,573,161
effective HSP length: 42
effective length of query: 20
effective length of database: 11,416,523
effective search space: 228330460
effective search space used: 228330460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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