GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000618-TA|BGIBMGA000618-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
         (62 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   0.66 
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              19   4.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    18   8.2  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 0.66
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 18  PEVTELKTEVVSVPEGCTT 36
           PEVT L +++V   E C+T
Sbjct: 488 PEVTMLFSDIVGFTEICST 506


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 20 VTELKTEVVSVPEGCTTKS 38
          + ELK ++  V E C T+S
Sbjct: 19 IEELKIQLHDVQEICKTES 37


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 31  PEGCTTKSKHG 41
           P GC+T  K G
Sbjct: 278 PHGCSTDEKVG 288


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625
Number of Sequences: 429
Number of extensions: 384
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 62
length of database: 140,377
effective HSP length: 42
effective length of query: 20
effective length of database: 122,359
effective search space:  2447180
effective search space used:  2447180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)