GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000618-TA|BGIBMGA000618-PA|IPR001179|Peptidylprolyl
isomerase, FKBP-type
         (62 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25220.1 68416.m03150 FK506-binding protein 2-1 (FKBP15-1) / ...    43   3e-05
At5g48580.1 68418.m06009 FK506-binding protein 2-2 (FKBP15-2) / ...    39   5e-04
At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase / F...    38   0.001
At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase, pu...    35   0.006
At5g45680.1 68418.m05616 FK506-binding protein 1 (FKBP13) identi...    26   3.6  
At4g14240.1 68417.m02197 expressed protein contains Pfam profile...    25   4.8  
At4g14230.1 68417.m02196 CBS domain-containing protein-related c...    25   4.8  
At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-proly...    25   8.3  
At1g53040.2 68414.m06006 expressed protein contains Pfam profile...    25   8.3  
At1g53040.1 68414.m06005 expressed protein contains Pfam profile...    25   8.3  

>At3g25220.1 68416.m03150 FK506-binding protein 2-1 (FKBP15-1) /
          immunophilin / peptidyl-prolyl cis-trans isomerase /
          rotamase identical to SP|Q38935 FK506-binding protein
          2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans
          isomerase) (PPiase) (Rotamase) (15 kDa FKBP)
          (FKBP-15-1) {Arabidopsis thaliana}, immunophilin
          (FKBP15-1) GB:U52046 [Arabidopsis thaliana] (Proc.
          Natl. Acad. Sci. U.S.A. 93 (14), 6964-6969 (1996))
          Length = 153

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 4  LRCVLMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
          L   ++ +A A    +VTEL+  V   P+ C  ++  GD + +HY G L DG  FDS
Sbjct: 15 LLLTILTLAYAKKSGDVTELQIGVKYKPQKCDLQAHKGDKIKVHYRGKLTDGTVFDS 71


>At5g48580.1 68418.m06009 FK506-binding protein 2-2 (FKBP15-2) /
          immunophilin / peptidyl-prolyl cis-trans isomerase /
          rotamase identical to SP|Q38936| FK506-binding protein
          2-2 precursor (EC 5.2.1.8);
          Length = 163

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 7  VLMLVALAGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
          ++ L   A    +V+EL+  V   P+ C  ++  GD + +HY G L DG  FDS
Sbjct: 18 LISLQGFAKKTGDVSELQIGVKFKPKTCEVQAHKGDTIKVHYRGKLTDGTVFDS 71


>At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase /
          FK506-binding protein (ROF1) identical to rotamase FKBP
          (ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen.
          Genet. 252 (5), 510-517 (1996))
          Length = 551

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 23 LKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
          LK +++   EG  T  ++GD + +HYTGTL DG KFDS
Sbjct: 40 LKKKLLKEGEGYETP-ENGDEVEVHYTGTLLDGTKFDS 76


>At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase,
          putative / FK506-binding protein, putative similar to
          rof1 [Arabidopsis thaliana] GI:1373396
          Length = 578

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 23 LKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDS 60
          LK ++V   E   T  ++GD + +HYTGTL DG KFDS
Sbjct: 48 LKKKLVKECEKWDTP-ENGDEVEVHYTGTLLDGTKFDS 84


>At5g45680.1 68418.m05616 FK506-binding protein 1 (FKBP13) identical
           to Probable FKBP-type peptidyl-prolyl cis-trans
           isomerase 3, chloroplast precursor (Ppiase) (Rotamase)
           (SP:Q9SCY2) / FK506 binding protein 1 (GI:21535744)
           [Arabidopsis thaliana]; contains Pfam PF00254:
           peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 208

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 41  GDMLTMHYTGTLDDGHKFDS 60
           G ++  HY G L++G  FDS
Sbjct: 109 GQLIKAHYVGKLENGKVFDS 128


>At4g14240.1 68417.m02197 expressed protein contains Pfam profile
           PF01595: Domain of unknown function
          Length = 494

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 14  AGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFD 59
           AG G E+T  +T ++S     T K+    M  +  T +LD   K D
Sbjct: 203 AGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLD 248


>At4g14230.1 68417.m02196 CBS domain-containing protein-related
           contains Pfam profile PF01595: Domain of unknown
           function
          Length = 495

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 14  AGAGPEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFD 59
           AG G E+T  +T ++S     T K+    M  +  T +LD   K D
Sbjct: 202 AGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLD 247


>At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein SP:Q9M222; similar to
           FKBP-type peptidyl-prolyl cis-trans isomerase fkpA
           precursor (PPiase) (Rotamase)(SP:Q8X880) [Escherichia
           coli O157:H7] ; contains Pfam PF00254: peptidyl-prolyl
           cis-trans isomerase, FKBP-type
          Length = 242

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 39  KHGDMLTMHYTGTLDDGHKFDS 60
           K G  +T HY G  + G + DS
Sbjct: 136 KDGQQVTFHYIGYNESGRRIDS 157


>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 21  TELKTEVVS-VPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSR 61
           TE K  + S VPEGCT   +H  +  +      ++  +F SR
Sbjct: 404 TEAKLPITSDVPEGCTIIREHIPITNLFTCVWFNEVDRFTSR 445


>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 21  TELKTEVVS-VPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSR 61
           TE K  + S VPEGCT   +H  +  +      ++  +F SR
Sbjct: 404 TEAKLPITSDVPEGCTIIREHIPITNLFTCVWFNEVDRFTSR 445


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,394,024
Number of Sequences: 28952
Number of extensions: 39151
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 10
length of query: 62
length of database: 12,070,560
effective HSP length: 42
effective length of query: 20
effective length of database: 10,854,576
effective search space: 217091520
effective search space used: 217091520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)